JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CABP1_chr12_120635626_120672324	0/0	c0005	1113	1	0	1	0	0	0	copy fasta	CABP1	chr12	120635626	120672324
CABP2_chr11_67513912_67528446	1/0	c0001	663	216	87	41	67	7	13	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/1	c0002	663	143	3	30	72	9	28	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	c0003	663	5	0	0	5	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	c0004	663	3	0	0	3	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	c0005	663	3	3	0	0	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	c0006	663	1	1	0	0	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	c0007	663	1	0	0	1	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	c0008	663	1	0	1	0	0	0	copy fasta	CABP2	chr11	67513912	67528446
CABP2_chr11_67513912_67528446	0/0	c0009	663	1	0	0	0	0	1	copy fasta	CABP2	chr11	67513912	67528446
CABP4_chr11_67450354_67466752	1/1	c0001	828	337	65	64	158	14	34	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	c0002	828	25	25	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	c0003	828	3	3	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	c0004	828	2	0	2	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP4_chr11_67450354_67466752	0/0	c0005	828	1	1	0	0	0	0	copy fasta	CABP4	chr11	67450354	67466752
CABP5_chr19_48024383_48049079	0/0	c0001	522	223	45	43	102	9	24	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	1/0	c0002	522	47	20	9	13	2	2	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0003	522	43	7	1	30	0	5	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/1	c0004	522	30	2	14	5	0	8	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0005	522	7	5	2	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0006	522	6	0	2	0	3	1	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0007	522	5	5	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0008	522	4	4	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0009	522	3	3	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0010	522	2	2	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0011	522	2	2	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0012	522	1	0	0	1	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0013	522	1	0	0	1	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0014	522	1	1	0	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP5_chr19_48024383_48049079	0/0	c0015	522	1	0	1	0	0	0	copy fasta	CABP5	chr19	48024383	48049079
CABP7_chr22_29715003_29736833	1/1	c0001	648	426	98	66	198	17	45	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	c0002	648	11	0	10	0	1	0	copy fasta	CABP7	chr22	29715003	29736833
CABP7_chr22_29715003_29736833	0/0	c0003	648	1	0	0	0	0	1	copy fasta	CABP7	chr22	29715003	29736833
CABS1_chr4_70329981_70342116	0/0	c0001	1188	261	44	55	122	11	29	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0002	1188	85	20	14	38	5	8	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/1	c0003	1188	60	2	6	43	2	6	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	1/0	c0004	1188	22	19	2	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0005	1188	6	5	1	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0006	1188	3	3	0	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0007	1188	2	0	0	2	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0008	1188	2	2	0	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0009	1188	2	0	0	2	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0010	1188	1	1	0	0	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0011	1188	1	0	0	0	0	1	copy fasta	CABS1	chr4	70329981	70342116
CABS1_chr4_70329981_70342116	0/0	c0012	1188	1	0	0	1	0	0	copy fasta	CABS1	chr4	70329981	70342116
CABYR_chr18_24134062_24166600	0/1	c0001	2586	98	3	23	51	5	15	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0002	2586	57	12	14	24	5	2	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0003	2590	45	4	7	32	0	2	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0004	2586	34	0	0	34	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0005	2586	27	14	1	10	0	2	copy fasta	CABYR	chr18	24134062	24166600