JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CABYR_chr18_24134062_24166600	0/0	c0006	2586	23	7	0	16	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0007	2586	13	6	4	0	0	3	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0008	2590	11	0	2	0	0	9	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0009	2586	10	0	4	1	3	2	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0010	2586	5	0	0	4	1	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0011	2586	5	0	0	5	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0012	2588	5	5	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0013	2586	5	0	0	5	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0014	2586	5	5	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0015	2576	4	4	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0016	2586	4	2	2	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	1/0	c0017	2586	4	2	1	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0018	2586	4	4	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0019	2586	3	0	1	1	1	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0020	2590	3	0	2	0	1	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0021	2590	3	3	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0022	2586	3	3	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0023	2590	3	2	0	1	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0024	2578	2	2	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0025	2581	2	0	0	0	0	2	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0026	2586	2	0	2	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0027	2586	2	0	1	0	0	1	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0028	2586	2	2	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0029	2590	2	2	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0030	2244	1	0	1	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0031	2586	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0032	2586	1	0	1	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0033	2588	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0034	2590	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0035	2581	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0036	2586	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0037	2586	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0038	2590	1	0	0	1	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0039	2586	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0040	2581	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0041	2581	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0042	2590	1	0	0	0	0	1	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0043	2590	1	0	0	0	0	1	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0044	2590	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0045	2586	1	0	0	1	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0046	2586	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0047	2586	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0048	2590	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0049	2586	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0050	2590	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CABYR_chr18_24134062_24166600	0/0	c0051	2590	1	1	0	0	0	0	copy fasta	CABYR	chr18	24134062	24166600
CACFD1_chr9_133454978_133475848	0/1	c0001	519	336	62	68	156	12	37	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	1/0	c0002	519	64	27	7	17	4	8	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0003	519	6	4	2	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0004	519	2	0	0	2	0	0	copy fasta	CACFD1	chr9	133454978	133475848