JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACFD1_chr9_133454978_133475848	0/0	c0005	555	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0006	519	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0007	519	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0008	519	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0009	519	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0010	519	1	1	0	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0011	519	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0012	519	1	0	0	0	0	1	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0013	519	1	0	1	0	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0014	519	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0015	519	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACFD1_chr9_133454978_133475848	0/0	c0016	519	1	0	0	1	0	0	copy fasta	CACFD1	chr9	133454978	133475848
CACHD1_chr1_64465129_64698053	0/1	c0001	3825	112	54	27	16	5	9	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0002	3825	26	15	3	5	2	1	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0003	3825	19	3	9	5	1	1	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0004	3825	2	2	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0005	3825	1	0	1	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0006	3825	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0007	3825	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0008	3825	1	0	0	0	0	1	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	1/0	c0009	3825	1	0	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0010	3825	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACHD1_chr1_64465129_64698053	0/0	c0011	3825	1	1	0	0	0	0	copy fasta	CACHD1	chr1	64465129	64698053
CACNA1A_chr19_13201442_13511479	0/0	c0001	7515	14	2	10	2	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/1	c0002	7521	10	3	1	3	0	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0003	7521	8	0	3	5	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0004	7515	8	1	4	2	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0005	7515	7	5	1	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0006	7515	7	4	0	2	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0007	7503	5	0	0	1	1	3	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0008	7521	4	0	1	1	0	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0009	7524	4	1	0	3	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0010	7521	3	0	1	1	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0011	7521	3	0	1	1	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0012	7521	3	0	2	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0013	7518	3	1	1	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0014	7522	3	0	0	1	0	2	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0015	7518	3	0	1	1	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0016	7515	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0017	7518	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0018	7515	2	0	2	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0019	7521	2	0	2	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0020	7515	2	0	1	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0021	7515	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0022	7515	2	0	2	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0023	7524	2	0	2	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0024	7515	2	1	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0025	7515	2	0	0	0	1	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0026	7515	2	0	0	1	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0027	7515	2	0	0	2	0	0	copy fasta	CACNA1A	chr19	13201442	13511479