JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1A_chr19_13201442_13511479	0/0	c0028	7518	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0029	7521	2	0	0	2	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0030	7521	2	0	1	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0031	7515	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	1/0	c0032	7521	2	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0033	7515	2	0	0	2	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0034	7515	2	1	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0035	7518	2	2	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0036	7524	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0037	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0038	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0039	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0040	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0041	7504	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0042	7503	1	0	0	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0043	7515	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0044	7503	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0045	7503	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0046	7518	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0047	7503	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0048	7516	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0049	7515	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0050	7521	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0051	7522	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0052	7521	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0053	7519	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0054	7518	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0055	7518	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0056	7518	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0057	7494	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0058	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0059	7503	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0060	7521	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0061	7536	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0062	7533	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0063	7522	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0064	7516	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0065	7524	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0066	7515	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0067	7524	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0068	7506	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0069	7519	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0070	7521	1	0	0	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0071	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0072	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0073	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0074	7512	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0075	7524	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0076	7522	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0077	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479