JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1A_chr19_13201442_13511479	0/0	c0078	7512	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0079	7504	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0080	7503	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0081	7521	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0082	7521	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0083	7519	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0084	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0085	7521	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0086	7521	1	0	0	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0087	7515	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0088	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0089	7515	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0090	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0091	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0092	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0093	7503	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0094	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0095	7521	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0096	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0097	7509	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0098	7515	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0099	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0100	7524	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0101	7521	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0102	7515	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0103	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0104	7521	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0105	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0106	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0107	7519	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0108	7518	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0109	7504	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0110	7518	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0111	7516	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0112	7512	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0113	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0114	7521	1	0	1	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0115	7516	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0116	7518	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0117	7521	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0118	7524	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0119	7518	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0120	7515	1	0	0	0	1	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0121	7521	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0122	7515	1	0	0	1	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0123	7503	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0124	7521	1	0	0	0	0	1	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0125	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0126	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1A_chr19_13201442_13511479	0/0	c0127	7515	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479