JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1A_chr19_13201442_13511479	0/0	c0128	7519	1	1	0	0	0	0	copy fasta	CACNA1A	chr19	13201442	13511479
CACNA1B_chr9_137872782_138129619	0/0	c0001	7020	37	4	9	16	3	5	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0002	7005	34	8	2	21	0	3	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0003	7005	19	18	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0004	7020	16	4	3	4	0	5	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0005	7005	15	0	1	14	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0006	7020	13	0	8	0	1	4	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0007	7005	12	0	0	11	1	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	1/0	c0008	7020	11	1	0	9	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0009	7005	6	0	0	6	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0010	7020	6	6	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0011	7020	5	0	0	5	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0012	7005	5	0	0	5	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0013	7005	5	0	0	1	0	4	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0014	7020	3	3	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0015	7005	3	0	0	1	0	2	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0016	7005	3	3	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0017	7005	3	2	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0018	7005	3	0	1	0	1	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0019	7005	3	0	0	3	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/1	c0020	7020	3	1	0	0	1	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0021	7005	3	3	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0022	7005	2	0	0	2	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0023	7020	2	2	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0024	7020	2	1	0	0	1	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0025	7020	2	2	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0026	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0027	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0028	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0029	7020	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0030	7020	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0031	7005	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0032	7005	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0033	7020	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0034	7020	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0035	7020	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0036	7020	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0037	7020	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0038	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0039	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0040	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0041	7005	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0042	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0043	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0044	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0045	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0046	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0047	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0048	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0049	7005	1	0	0	1	0	0	copy fasta	CACNA1B	chr9	137872782	138129619