JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1B_chr9_137872782_138129619	0/0	c0050	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0051	7005	1	0	1	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0052	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0053	7005	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0054	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0055	7020	1	1	0	0	0	0	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0056	7020	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1B_chr9_137872782_138129619	0/0	c0057	7020	1	0	0	0	0	1	copy fasta	CACNA1B	chr9	137872782	138129619
CACNA1C_chr12_2047987_2702950	0/0	c0001	6417	26	21	0	2	1	2	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0002	6417	13	3	3	2	0	5	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0003	6417	11	7	3	1	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0004	6417	5	4	0	0	0	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0005	6417	4	1	0	2	0	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0006	6417	3	1	0	1	0	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0007	6417	2	0	2	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0008	6417	2	1	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0009	6417	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0010	6417	2	0	0	1	0	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0011	6417	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0012	6417	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0013	6417	2	2	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0014	6417	2	0	1	1	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0015	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0016	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0017	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0018	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0019	6417	1	0	0	0	1	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0020	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0021	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0022	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0023	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0024	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0025	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0026	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0027	6417	1	0	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0028	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0029	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0030	6417	1	0	0	0	0	1	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0031	6417	1	0	1	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0032	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0033	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0034	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0035	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0036	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0037	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0038	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0039	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1C_chr12_2047987_2702950	0/0	c0040	6417	1	1	0	0	0	0	copy fasta	CACNA1C	chr12	2047987	2702950
CACNA1D_chr3_53489611_53818733	0/0	c0001	6546	55	14	13	16	3	9	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0002	6546	52	39	3	8	1	1	copy fasta	CACNA1D	chr3	53489611	53818733