JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1D_chr3_53489611_53818733	1/0	c0003	6546	35	6	7	11	6	4	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/1	c0004	6546	25	0	6	11	2	5	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0005	6546	5	0	3	1	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0006	6546	5	1	1	2	0	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0007	6546	4	4	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0008	6546	4	1	0	1	1	1	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0009	6546	4	4	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0010	6546	3	0	3	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0011	6546	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0012	6546	2	2	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0013	6546	2	0	0	0	0	2	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0014	6546	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0015	6546	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0016	6546	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0017	6546	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0018	6546	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0019	6546	1	0	0	1	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0020	6546	1	0	1	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0021	6546	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0022	6546	1	0	0	0	1	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0023	6546	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0024	6546	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1D_chr3_53489611_53818733	0/0	c0025	6546	1	1	0	0	0	0	copy fasta	CACNA1D	chr3	53489611	53818733
CACNA1E_chr1_181478517_181813084	1/0	c0001	6942	65	21	13	19	1	10	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0002	6942	45	9	11	16	3	6	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0003	6942	27	3	7	8	0	9	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/1	c0004	6942	16	5	5	2	1	2	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0005	6942	8	8	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0006	6942	8	3	2	0	2	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0007	6942	4	0	4	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0008	6942	4	3	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0009	6942	3	3	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0010	6942	2	2	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0011	6942	2	0	2	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0012	6942	2	2	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0013	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0014	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0015	6942	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0016	6942	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0017	6942	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0018	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0019	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0020	6942	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0021	6942	1	0	0	0	1	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0022	6942	1	0	0	0	0	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0023	6942	1	0	0	1	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0024	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0025	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0026	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0027	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084