Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACER1_chr19_6301142_6338612	0/0	c0003	795	22	6	4	4	0	8	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0004	795	13	10	3	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0005	795	4	0	0	0	1	3	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0006	795	2	2	0	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0007	795	1	0	1	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0008	795	1	1	0	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0009	795	1	0	0	1	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0010	795	1	0	1	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0011	795	1	0	0	1	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER2_chr9_19404009_19457505	1/0	c0001	828	299	71	59	116	17	35	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	c0002	828	24	0	2	22	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	c0003	828	22	19	2	0	0	1	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	c0004	828	7	6	1	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	c0005	828	2	2	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/1	c0006	828	1	0	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	c0007	828	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	c0008	828	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	c0009	828	1	0	0	0	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER3_chr11_76855918_77031797	0/1	c0001	804	170	19	38	86	11	15	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	1/0	c0002	804	114	33	24	37	5	14	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	c0003	804	41	40	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	c0004	804	17	0	4	12	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	c0005	804	2	2	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	c0006	804	1	0	0	1	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	c0007	804	1	0	1	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACE_chr17_63472061_63503373	0/1	c0001	3921	123	5	31	62	4	20	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	1/0	c0002	3921	92	5	21	52	3	10	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0003	3921	20	18	2	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0004	3921	17	10	3	0	2	2	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0005	3921	8	6	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0006	3921	7	2	2	2	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0007	3921	6	1	1	4	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0008	3921	5	2	1	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0009	3921	5	5	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0010	3921	4	4	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0011	3921	4	4	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0012	3927	3	0	0	0	0	3	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0013	3921	3	0	0	3	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0014	3921	3	3	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0015	3921	3	0	0	3	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0016	3921	3	2	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0017	3921	3	0	2	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0018	3921	3	0	0	2	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0019	3927	3	3	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0020	3927	2	2	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0021	3921	2	0	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0022	3921	2	0	2	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0023	3921	2	2	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0024	3921	2	2	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0025	3921	2	0	1	0	0	1	copy fasta	ACE	chr17	63472061	63503373