JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1E_chr1_181478517_181813084	0/0	c0028	6942	1	1	0	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0029	6942	1	0	0	0	0	1	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0030	6942	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0031	6942	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1E_chr1_181478517_181813084	0/0	c0032	6942	1	0	1	0	0	0	copy fasta	CACNA1E	chr1	181478517	181813084
CACNA1F_chrX_49200063_49238340	1/0	c0001	5901	117	29	15	63	2	7	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/1	c0002	5901	75	12	20	18	9	15	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0003	5901	36	0	1	27	0	8	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0004	5904	22	18	4	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0005	5904	8	8	0	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0006	5901	6	0	6	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0007	5904	4	3	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0008	5900	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0009	5900	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0010	5901	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0011	5901	1	0	0	0	0	1	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0012	5901	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0013	5901	1	0	0	0	0	1	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0014	5901	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0015	5901	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0016	5902	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0017	5901	1	0	0	0	0	1	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0018	5901	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0019	5898	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0020	5901	1	1	0	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0021	5901	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0022	5901	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0023	5901	1	0	0	0	0	1	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0024	5901	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0025	5901	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0026	5906	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0027	5901	1	0	1	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0028	5900	1	0	0	1	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1F_chrX_49200063_49238340	0/0	c0029	5904	1	1	0	0	0	0	copy fasta	CACNA1F	chrX	49200063	49238340
CACNA1G_chr17_50555715_50632474	0/1	c0001	7134	49	3	13	22	4	6	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0002	7134	44	24	7	3	1	9	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0003	7134	25	15	5	3	1	1	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	1/0	c0004	7134	25	4	12	0	2	6	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0005	7134	16	3	5	2	3	3	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0006	7134	12	3	3	4	0	2	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0007	7134	9	0	1	4	0	4	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0008	7134	7	1	1	2	3	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0009	7134	6	6	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0010	7134	5	4	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0011	7134	4	4	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0012	7134	3	0	0	0	0	3	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0013	7134	3	3	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0014	7134	2	1	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0015	7134	2	0	0	2	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0016	7134	2	2	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474