JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1G_chr17_50555715_50632474	0/0	c0017	7134	2	2	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0018	7134	2	0	2	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0019	7134	2	2	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0020	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0021	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0022	7134	1	0	0	0	1	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0023	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0024	7134	1	0	0	0	0	1	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0025	7134	1	0	0	1	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0026	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0027	7134	1	0	0	1	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0028	7134	1	0	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0029	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0030	7134	1	0	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0031	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0032	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0033	7134	1	0	1	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0034	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0035	7134	1	0	0	0	1	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0036	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0037	7134	1	0	0	0	0	1	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0038	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0039	7134	1	0	0	1	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0040	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0041	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0042	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0043	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0044	7134	1	1	0	0	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1G_chr17_50555715_50632474	0/0	c0045	7134	1	0	0	1	0	0	copy fasta	CACNA1G	chr17	50555715	50632474
CACNA1H_chr16_1148106_1226768	0/0	c0001	7062	88	2	22	56	3	5	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0002	7062	23	13	2	3	2	3	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0003	7062	9	1	3	0	1	4	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0004	7062	9	0	2	5	0	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0005	7062	8	0	5	0	0	3	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0006	7062	8	0	0	8	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0007	7062	7	1	1	4	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0008	7062	7	3	4	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	1/0	c0009	7062	5	0	1	0	1	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0010	7062	5	1	2	2	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0011	7062	5	5	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0012	7062	4	4	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0013	7062	4	0	1	0	2	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0014	7062	4	0	0	4	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0015	7062	3	1	1	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0016	7062	3	0	0	0	1	2	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0017	7062	3	3	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0018	7062	3	0	0	3	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0019	7062	3	0	0	3	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0020	7062	3	0	2	0	1	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0021	7062	2	0	0	2	0	0	copy fasta	CACNA1H	chr16	1148106	1226768