JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1H_chr16_1148106_1226768	0/0	c0122	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0123	7062	1	0	0	0	0	1	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0124	7062	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0125	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0126	7062	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0127	7062	1	0	1	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0128	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0129	7062	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0130	7062	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0131	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0132	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0133	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0134	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0135	7062	1	1	0	0	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1H_chr16_1148106_1226768	0/0	c0136	7062	1	0	0	1	0	0	copy fasta	CACNA1H	chr16	1148106	1226768
CACNA1I_chr22_39565753_39694735	0/0	c0001	6672	43	12	7	12	1	11	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0002	6672	39	2	9	24	2	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	1/0	c0003	6672	30	10	9	0	3	7	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0004	6672	10	1	5	1	2	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0005	6672	9	9	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0006	6672	8	0	4	1	1	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0007	6672	8	8	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0008	6672	6	3	3	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0009	6672	6	5	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0010	6672	5	0	0	0	3	2	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0011	6672	4	0	4	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0012	6673	4	1	2	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0013	6672	3	3	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0014	6672	3	3	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0015	6673	3	0	2	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0016	6672	3	3	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0017	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0018	6672	2	0	0	0	2	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0019	6672	2	1	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0020	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0021	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0022	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0023	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0024	6672	2	1	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0025	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0026	6672	2	1	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0027	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0028	6673	2	0	1	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0029	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0030	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0031	6672	2	2	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0032	6672	2	0	1	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0033	6672	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0034	6672	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0035	6672	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735