JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1I_chr22_39565753_39694735	0/0	c0036	6672	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0037	6672	1	0	0	0	1	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0038	6672	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0039	6672	1	0	0	0	1	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0040	6672	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0041	6673	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0042	6672	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0043	6673	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/1	c0044	6672	1	0	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0045	6672	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0046	6672	1	0	0	0	0	1	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0047	6672	1	0	1	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0048	6672	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0049	6672	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0050	6672	1	0	0	1	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0051	6672	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1I_chr22_39565753_39694735	0/0	c0052	6672	1	1	0	0	0	0	copy fasta	CACNA1I	chr22	39565753	39694735
CACNA1S_chr1_201034512_201117426	1/0	c0001	5622	58	2	16	30	1	8	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0002	5622	20	0	5	10	0	5	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0003	5622	20	0	6	14	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0004	5622	16	6	5	3	0	2	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/1	c0005	5622	14	0	3	3	2	5	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0006	5622	13	2	8	0	2	1	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0007	5622	10	0	0	10	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0008	5622	9	8	1	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0009	5622	8	7	1	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0010	5622	7	0	0	5	0	2	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0011	5622	7	3	3	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0012	5622	5	4	1	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0013	5622	5	0	4	0	0	1	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0014	5622	4	3	0	0	0	1	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0015	5622	4	0	0	1	0	3	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0016	5622	4	0	0	4	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0017	5622	4	4	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0018	5622	3	3	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0019	5622	3	3	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0020	5622	3	0	0	3	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0021	5622	3	0	0	3	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0022	5622	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0023	5622	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0024	5622	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0025	5622	2	0	2	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0026	5622	2	0	1	0	1	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0027	5622	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0028	5622	2	0	0	0	0	2	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0029	5622	2	0	0	2	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0030	5622	2	0	0	2	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0031	5622	2	0	0	2	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0032	5622	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0033	5622	2	2	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426