JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA1S_chr1_201034512_201117426	0/0	c0084	5622	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0085	5622	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0086	5622	1	0	0	0	1	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0087	5622	1	0	1	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0088	5622	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0089	5622	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0090	5622	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0091	5622	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0092	5622	1	0	0	1	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0093	5622	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0094	5622	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0095	5622	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0096	5622	1	1	0	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA1S_chr1_201034512_201117426	0/0	c0097	5622	1	0	1	0	0	0	copy fasta	CACNA1S	chr1	201034512	201117426
CACNA2D1_chr7_81941444_82448777	1/0	c0001	3276	106	43	27	24	1	10	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/1	c0002	3276	26	7	6	7	1	4	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	c0003	3276	5	5	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	c0004	3276	3	3	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	c0005	3276	1	0	1	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	c0006	3276	1	1	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	c0007	3276	1	1	0	0	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D1_chr7_81941444_82448777	0/0	c0008	3276	1	0	0	1	0	0	copy fasta	CACNA2D1	chr7	81941444	82448777
CACNA2D2_chr3_50357613_50508634	1/1	c0001	3432	181	31	39	82	6	21	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0002	3432	27	22	2	0	0	3	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0003	3432	15	13	2	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0004	3432	3	3	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0005	3432	2	2	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0006	3432	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0007	3432	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0008	3432	1	0	0	1	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0009	3432	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0010	3432	1	0	1	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D2_chr3_50357613_50508634	0/0	c0011	3432	1	1	0	0	0	0	copy fasta	CACNA2D2	chr3	50357613	50508634
CACNA2D3_chr3_54117552_55079557	0/1	c0001	3276	27	17	3	2	1	3	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	1/0	c0002	3276	15	8	4	2	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0003	3276	11	5	3	1	1	1	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0004	3276	6	3	1	2	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0005	3276	5	4	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0006	3276	3	1	1	1	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0007	3276	3	3	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0008	3276	3	2	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0009	3276	3	1	1	1	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0010	3276	3	1	2	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0011	3276	3	0	0	1	1	1	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0012	3276	2	1	0	0	1	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0013	3276	2	2	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0014	3276	2	2	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0015	3276	2	0	0	1	1	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0016	3276	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0017	3276	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557