JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA2D3_chr3_54117552_55079557	0/0	c0018	3276	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0019	3276	1	0	0	1	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0020	3276	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0021	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0022	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0023	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0024	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0025	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0026	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0027	3276	1	0	0	0	0	1	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0028	3276	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0029	3276	1	0	0	0	1	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0030	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0031	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0032	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0033	3276	1	0	0	1	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0034	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0035	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0036	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0037	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0038	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0039	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0040	3276	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0041	3276	1	0	0	1	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0042	3276	1	0	1	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D3_chr3_54117552_55079557	0/0	c0043	3276	1	1	0	0	0	0	copy fasta	CACNA2D3	chr3	54117552	55079557
CACNA2D4_chr12_1786963_1923652	0/1	c0001	3414	116	26	20	50	6	13	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0002	3414	56	4	3	43	0	6	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0003	3414	18	13	1	2	0	2	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0004	3414	11	1	5	3	0	2	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0005	3414	11	3	0	8	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0006	3414	10	8	2	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0007	3414	9	1	3	5	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	1/0	c0008	3414	8	0	3	0	2	2	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0009	3414	7	2	1	4	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0010	3414	6	1	3	2	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0011	3414	6	0	4	0	1	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0012	3414	5	0	5	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0013	3414	4	1	0	3	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0014	3414	3	0	0	1	0	2	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0015	3414	2	0	2	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0016	3414	2	0	2	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0017	3414	2	2	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0018	3414	2	2	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0019	3414	2	1	0	0	0	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0020	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0021	3414	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0022	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0023	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0024	3414	1	0	0	1	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652