JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNA2D4_chr12_1786963_1923652	0/0	c0025	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0026	3414	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0027	3414	1	0	0	0	1	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0028	3414	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0029	3414	1	0	0	0	0	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0030	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0031	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0032	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0033	3414	1	0	0	0	1	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0034	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0035	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0036	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0037	3414	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0038	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0039	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0040	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0041	3414	1	0	0	0	1	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0042	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0043	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0044	3414	1	0	0	1	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0045	3414	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0046	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0047	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0048	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0049	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0050	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0051	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0052	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0053	3414	1	0	0	1	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0054	3414	1	0	0	0	0	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0055	3414	1	0	1	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0056	3414	1	1	0	0	0	0	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNA2D4_chr12_1786963_1923652	0/0	c0057	3414	1	0	0	0	0	1	copy fasta	CACNA2D4	chr12	1786963	1923652
CACNB1_chr17_39168453_39202669	1/1	c0001	1797	363	85	61	160	17	38	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0002	1797	19	4	1	12	1	1	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0003	1797	4	0	4	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0004	1797	3	3	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0005	1797	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0006	1797	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0007	1797	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0008	1797	1	0	0	1	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0009	1797	1	0	0	1	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0010	1797	1	0	0	0	0	1	copy fasta	CACNB1	chr17	39168453	39202669
CACNB1_chr17_39168453_39202669	0/0	c0011	1797	1	1	0	0	0	0	copy fasta	CACNB1	chr17	39168453	39202669
CACNB2_chr10_18135424_18548557	0/0	c0001	1983	123	52	32	28	4	7	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	c0002	1983	57	21	11	18	0	7	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	c0003	1983	12	5	5	0	2	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	c0004	1983	5	3	0	2	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	c0005	1983	2	2	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557
CACNB2_chr10_18135424_18548557	0/0	c0006	1983	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18135424	18548557