Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACE_chr17_63472061_63503373	0/0	c0026	3921	2	0	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0027	3921	2	0	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0028	3921	2	0	1	0	1	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0029	3921	2	1	1	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0030	3921	2	0	2	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0031	3921	2	0	0	2	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0032	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0033	3921	1	0	0	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0034	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0035	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0036	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0037	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0038	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0039	3921	1	0	0	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0040	3921	1	0	0	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0041	3921	1	0	0	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0042	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0043	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0044	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0045	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0046	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0047	3921	1	0	0	0	1	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0048	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0049	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0050	3921	1	0	1	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0051	3921	1	0	1	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0052	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0053	3921	1	0	1	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0054	3921	1	0	1	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0055	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0056	3921	1	0	0	0	1	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0057	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0058	3921	1	0	0	0	0	1	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0059	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0060	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0061	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0062	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0063	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0064	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0065	3921	1	1	0	0	0	0	copy fasta	ACE	chr17	63472061	63503373
ACE_chr17_63472061_63503373	0/0	c0066	3921	1	0	0	1	0	0	copy fasta	ACE	chr17	63472061	63503373
ACHE_chr7_100884994_100900888	1/0	c0001	1845	360	61	64	170	17	47	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0002	1845	29	28	1	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0003	1845	6	1	2	0	1	2	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0004	1845	4	0	0	4	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0005	1845	3	3	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0006	1845	2	2	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0007	1845	1	1	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0008	1894	1	0	0	0	0	1	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0009	1845	1	1	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888