JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNB2_chr10_18335709_18548557	1/1	c0001	1821	171	54	40	55	5	15	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	c0002	1821	101	21	15	48	1	16	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	c0003	1821	16	5	6	0	4	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	c0004	1821	9	3	0	5	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	c0005	1821	2	2	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	c0006	1821	1	0	0	0	0	1	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	c0007	1821	1	0	1	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB2_chr10_18335709_18548557	0/0	c0008	1821	1	1	0	0	0	0	copy fasta	CACNB2	chr10	18335709	18548557
CACNB3_chr12_48813496_48833941	1/0	c0001	1455	202	58	43	68	10	22	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/1	c0002	1455	155	30	25	79	6	14	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	c0003	1455	2	0	0	2	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	c0004	1455	1	1	0	0	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	c0005	1455	1	0	1	0	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	c0006	1455	1	0	0	1	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	c0007	1455	1	0	1	0	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB3_chr12_48813496_48833941	0/0	c0008	1455	1	1	0	0	0	0	copy fasta	CACNB3	chr12	48813496	48833941
CACNB4_chr2_151827771_152104044	0/0	c0001	1563	168	53	28	59	7	21	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	c0002	1563	45	12	6	23	1	3	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	c0003	1563	14	8	2	0	0	4	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	c0004	1563	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	c0005	1563	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNB4_chr2_151827771_152104044	0/0	c0006	1563	1	1	0	0	0	0	copy fasta	CACNB4	chr2	151827771	152104044
CACNG1_chr17_67039554_67061797	1/1	c0001	669	382	86	67	172	10	45	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0002	669	35	1	14	16	2	2	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0003	669	4	4	0	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0004	669	2	2	0	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0005	669	1	0	0	1	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0006	669	1	1	0	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0007	669	1	0	0	1	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0008	669	1	0	0	0	0	1	copy fasta	CACNG1	chr17	67039554	67061797
CACNG1_chr17_67039554_67061797	0/0	c0009	669	1	0	1	0	0	0	copy fasta	CACNG1	chr17	67039554	67061797
CACNG2_chr22_36555857_36708752	1/1	c0001	972	214	76	46	58	8	24	copy fasta	CACNG2	chr22	36555857	36708752
CACNG3_chr16_24251335_24367412	1/1	c0001	948	360	87	68	150	14	39	copy fasta	CACNG3	chr16	24251335	24367412
CACNG3_chr16_24251335_24367412	0/0	c0002	948	5	2	0	0	0	3	copy fasta	CACNG3	chr16	24251335	24367412
CACNG3_chr16_24251335_24367412	0/0	c0003	948	1	1	0	0	0	0	copy fasta	CACNG3	chr16	24251335	24367412
CACNG4_chr17_66959707_67038398	1/1	c0001	984	305	87	60	117	7	32	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	c0002	984	32	1	12	17	1	1	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	c0003	984	9	0	2	2	0	5	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	c0004	984	3	3	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG4_chr17_66959707_67038398	0/0	c0005	984	3	3	0	0	0	0	copy fasta	CACNG4	chr17	66959707	67038398
CACNG5_chr17_66830117_66899751	1/1	c0001	828	338	75	67	139	14	41	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0002	828	15	5	2	5	2	1	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0003	828	11	9	2	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0004	828	2	0	2	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0005	828	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0006	828	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0007	828	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0008	828	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0009	828	1	0	1	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751
CACNG5_chr17_66830117_66899751	0/0	c0010	828	1	1	0	0	0	0	copy fasta	CACNG5	chr17	66830117	66899751