JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACNG6_chr19_53986637_54017666	1/1	c0001	783	366	57	68	186	13	40	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0002	783	24	13	4	4	1	2	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0003	783	17	14	3	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0004	783	9	0	7	0	2	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0005	783	3	3	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0006	783	2	2	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0007	765	1	0	0	0	0	1	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0008	783	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0009	783	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0010	783	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0011	783	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0012	783	1	0	0	0	0	1	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0013	783	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0014	783	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG6_chr19_53986637_54017666	0/0	c0015	783	1	1	0	0	0	0	copy fasta	CACNG6	chr19	53986637	54017666
CACNG7_chr19_53904278_53948950	0/0	c0001	828	363	93	70	142	18	40	copy fasta	CACNG7	chr19	53904278	53948950
CACNG7_chr19_53904278_53948950	0/0	c0002	828	1	1	0	0	0	0	copy fasta	CACNG7	chr19	53904278	53948950
CACNG8_chr19_53957937_53995215	1/1	c0001	1278	388	95	77	157	18	39	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	c0002	1278	4	3	1	0	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	c0003	1278	1	0	0	1	0	0	copy fasta	CACNG8	chr19	53957937	53995215
CACNG8_chr19_53957937_53995215	0/0	c0004	1278	1	0	0	0	0	1	copy fasta	CACNG8	chr19	53957937	53995215
CACTIN_chr19_3605645_3631790	0/0	c0001	2277	155	37	41	59	7	11	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0002	2277	147	35	11	77	4	20	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0003	2277	44	0	0	36	0	8	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0004	2277	20	18	1	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0005	2277	14	0	11	0	3	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	1/0	c0006	2277	6	0	1	0	2	2	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0007	2277	2	0	2	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0008	2277	2	0	0	2	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0009	2277	2	0	0	2	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0010	2277	2	0	2	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0011	2277	2	2	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0012	2277	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0013	2277	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0014	2277	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0015	2277	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/1	c0016	2277	1	0	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0017	2277	1	0	0	0	0	1	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0018	2277	1	0	1	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0019	2277	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0020	2277	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0021	2277	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0022	2277	1	0	0	1	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACTIN_chr19_3605645_3631790	0/0	c0023	2277	1	1	0	0	0	0	copy fasta	CACTIN	chr19	3605645	3631790
CACUL1_chr10_118671411_118759970	1/1	c0001	1110	367	82	56	176	12	39	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	c0002	1110	16	8	6	1	1	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	c0003	1110	2	0	0	0	0	2	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	c0004	1110	1	0	0	1	0	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	c0005	1110	1	0	0	0	1	0	copy fasta	CACUL1	chr10	118671411	118759970
CACUL1_chr10_118671411_118759970	0/0	c0006	1110	1	0	0	0	0	1	copy fasta	CACUL1	chr10	118671411	118759970