JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CACYBP_chr1_174994947_175017027	1/1	c0001	687	406	86	76	186	18	38	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	c0002	687	6	6	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CACYBP_chr1_174994947_175017027	0/0	c0003	687	4	4	0	0	0	0	copy fasta	CACYBP	chr1	174994947	175017027
CADM1_chr11_115164236_115509415	0/0	c0001	1416	159	64	34	40	1	20	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	c0002	1416	2	1	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	c0003	1416	1	0	1	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	c0004	1416	1	0	0	0	1	0	copy fasta	CADM1	chr11	115164236	115509415
CADM1_chr11_115164236_115509415	0/0	c0005	1416	1	1	0	0	0	0	copy fasta	CADM1	chr11	115164236	115509415
CADM2_chr3_84953989_86079429	0/0	c0001	1215	124	41	19	32	9	23	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	c0002	1215	10	10	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	c0003	1215	9	9	0	0	0	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	c0004	1215	2	0	1	0	1	0	copy fasta	CADM2	chr3	84953989	86079429
CADM2_chr3_84953989_86079429	0/0	c0005	1215	1	0	0	0	0	1	copy fasta	CADM2	chr3	84953989	86079429
CADM3_chr1_159166615_159208313	0/1	c0001	1197	313	70	45	158	12	27	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	1/0	c0002	1197	56	4	25	18	3	5	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	c0003	1197	2	2	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	c0004	1197	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	c0005	1197	1	1	0	0	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	c0006	1197	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	c0007	1197	1	0	0	0	1	0	copy fasta	CADM3	chr1	159166615	159208313
CADM3_chr1_159166615_159208313	0/0	c0008	1197	1	0	0	1	0	0	copy fasta	CADM3	chr1	159166615	159208313
CADM4_chr19_43617368_43644850	1/1	c0001	1167	415	82	73	200	16	42	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	c0002	1167	3	1	1	0	0	1	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	c0003	1167	2	2	0	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	c0004	1167	2	2	0	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	c0005	1167	1	0	0	0	0	1	copy fasta	CADM4	chr19	43617368	43644850
CADM4_chr19_43617368_43644850	0/0	c0006	1167	1	1	0	0	0	0	copy fasta	CADM4	chr19	43617368	43644850
CADPS2_chr7_122313411_122891460	0/0	c0001	3891	62	31	13	6	2	10	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	1/1	c0002	3891	28	11	5	4	3	3	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0003	3891	20	4	3	8	1	4	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0004	3891	7	0	5	1	0	1	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0005	3891	3	3	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0006	3891	2	2	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0007	3891	1	0	0	1	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0008	3891	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0009	3891	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS2_chr7_122313411_122891460	0/0	c0010	3891	1	1	0	0	0	0	copy fasta	CADPS2	chr7	122313411	122891460
CADPS_chr3_62393348_62880416	1/1	c0001	4062	129	51	33	22	7	14	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0002	4062	11	3	2	3	1	2	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0003	4062	5	3	2	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0004	4062	4	4	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0005	4062	2	2	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0006	4062	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0007	4062	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0008	4062	1	0	1	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0009	4062	1	0	0	1	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0010	4062	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0011	4062	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0012	4062	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CADPS_chr3_62393348_62880416	0/0	c0013	4062	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416