JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CADPS_chr3_62393348_62880416	0/0	c0014	4062	1	1	0	0	0	0	copy fasta	CADPS	chr3	62393348	62880416
CAD_chr2_27212369_27248943	1/0	c0001	6678	84	8	24	31	7	13	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/1	c0002	6678	84	19	26	19	5	14	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0003	6678	21	19	2	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0004	6678	20	14	6	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0005	6678	16	11	2	0	0	3	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0006	6678	14	0	0	11	0	3	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0007	6678	3	3	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0008	6678	2	2	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0009	6678	2	1	1	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0010	6678	2	0	2	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0011	6678	1	0	1	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0012	6678	1	1	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0013	6678	1	1	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0014	6678	1	0	1	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0015	6678	1	1	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0016	6678	1	1	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0017	6678	1	0	0	1	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0018	6678	1	1	0	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0019	6678	1	0	0	0	0	1	copy fasta	CAD	chr2	27212369	27248943
CAD_chr2_27212369_27248943	0/0	c0020	6678	1	0	1	0	0	0	copy fasta	CAD	chr2	27212369	27248943
CAGE1_chr6_7321659_7394742	1/0	c0001	2520	181	46	33	83	4	14	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/1	c0002	2520	125	18	25	63	2	16	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	c0003	2520	29	2	5	20	2	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	c0004	2520	16	15	1	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	c0005	2520	5	5	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	c0006	2520	1	1	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	c0007	2520	1	0	0	1	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	c0008	2520	1	0	0	1	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CAGE1_chr6_7321659_7394742	0/0	c0009	2520	1	1	0	0	0	0	copy fasta	CAGE1	chr6	7321659	7394742
CALB1_chr8_90053608_90087879	1/1	c0001	786	383	88	60	187	14	32	copy fasta	CALB1	chr8	90053608	90087879
CALB1_chr8_90053608_90087879	0/0	c0002	786	1	0	0	1	0	0	copy fasta	CALB1	chr8	90053608	90087879
CALB2_chr16_71353723_71395433	1/1	c0001	816	380	78	65	183	12	40	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	c0002	816	42	15	11	8	2	6	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	c0003	816	2	0	0	2	0	0	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	c0004	816	1	1	0	0	0	0	copy fasta	CALB2	chr16	71353723	71395433
CALB2_chr16_71353723_71395433	0/0	c0005	816	1	0	0	1	0	0	copy fasta	CALB2	chr16	71353723	71395433
CALCA_chr11_14963501_14977351	1/1	c0001	426	359	79	56	167	14	41	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0002	426	16	9	2	5	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0003	426	2	0	0	2	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0004	426	1	1	0	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0005	426	1	1	0	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0006	426	1	0	1	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0007	426	1	1	0	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0008	426	1	1	0	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0009	426	1	0	1	0	0	0	copy fasta	CALCA	chr11	14963501	14977351
CALCA_chr11_14963501_14977351	0/0	c0010	426	1	0	0	0	0	1	copy fasta	CALCA	chr11	14963501	14977351
CALCB_chr11_15068593_15083637	1/1	c0001	384	411	93	64	194	18	40	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	c0002	384	3	3	0	0	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCB_chr11_15068593_15083637	0/0	c0003	384	1	1	0	0	0	0	copy fasta	CALCB	chr11	15068593	15083637