JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CALCB_chr11_15068593_15083637	0/0	c0004	384	1	1	0	0	0	0	copy fasta	CALCB	chr11	15068593	15083637
CALCOCO1_chr12_53703517_53732452	1/0	c0001	2076	138	41	35	29	9	23	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0002	2076	92	11	12	57	3	9	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0003	2076	85	0	11	70	0	4	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/1	c0004	2076	68	27	15	13	2	10	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0005	2076	28	0	0	28	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0006	2076	5	0	0	5	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0007	2076	3	3	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0008	2076	3	3	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0009	2076	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0010	2076	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0011	2076	1	0	0	1	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0012	2076	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0013	2076	1	1	0	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO1_chr12_53703517_53732452	0/0	c0014	2076	1	0	1	0	0	0	copy fasta	CALCOCO1	chr12	53703517	53732452
CALCOCO2_chr17_48826035_48870245	0/0	c0001	1341	103	30	29	34	4	6	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	c0002	1341	87	3	12	63	1	8	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	1/1	c0003	1341	81	21	24	12	7	15	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	c0004	1341	51	25	5	12	2	7	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	c0005	1341	3	3	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	c0006	1341	2	2	0	0	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCOCO2_chr17_48826035_48870245	0/0	c0007	1311	1	0	0	1	0	0	copy fasta	CALCOCO2	chr17	48826035	48870245
CALCRL_chr2_187336964_187453252	1/1	c0001	1386	299	77	58	129	11	22	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	c0002	1386	24	2	3	10	1	8	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	c0003	1386	12	12	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	c0004	1386	6	0	2	4	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	c0005	1386	1	0	0	1	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	c0006	1386	1	1	0	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCRL_chr2_187336964_187453252	0/0	c0007	1386	1	0	1	0	0	0	copy fasta	CALCRL	chr2	187336964	187453252
CALCR_chr7_93419486_93579724	0/0	c0001	1425	167	34	12	106	1	14	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	1/1	c0002	1425	94	28	26	15	9	14	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0003	1425	8	7	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0004	1425	5	4	1	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0005	1425	5	0	0	5	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0006	1425	4	4	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0007	1425	2	2	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0008	1425	2	2	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0009	1425	2	0	0	0	0	2	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0010	1425	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0011	1425	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALCR_chr7_93419486_93579724	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	CALCR	chr7	93419486	93579724
CALD1_chr7_134774634_134975729	0/0	c0001	2382	133	33	21	56	4	19	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	1/0	c0002	2382	109	37	23	23	6	19	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/1	c0003	2382	5	0	4	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0004	2382	3	0	1	0	0	2	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0005	2382	3	3	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0006	2382	2	0	1	0	0	1	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0007	2382	2	0	0	2	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0008	2382	1	0	0	1	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0009	2382	1	0	1	0	0	0	copy fasta	CALD1	chr7	134774634	134975729