JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CALD1_chr7_134774634_134975729	0/0	c0010	2382	1	0	1	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0011	2382	1	1	0	0	0	0	copy fasta	CALD1	chr7	134774634	134975729
CALD1_chr7_134774634_134975729	0/0	c0012	2382	1	0	0	0	0	1	copy fasta	CALD1	chr7	134774634	134975729
CALHM1_chr10_103448240_103463900	0/1	c0001	1041	243	64	35	101	6	36	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0002	1041	138	15	27	82	3	11	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	1/0	c0003	1041	42	1	17	14	7	2	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0004	1041	8	0	0	8	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0005	1041	8	0	0	8	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0006	1041	6	6	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0007	1041	4	4	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0008	1041	2	0	0	0	2	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0009	1041	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0010	1041	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0011	1041	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0012	1041	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0013	1041	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0014	1041	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0015	1041	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0016	1041	1	0	0	0	0	1	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0017	1041	1	0	1	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0018	1041	1	1	0	0	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM1_chr10_103448240_103463900	0/0	c0019	1041	1	0	0	1	0	0	copy fasta	CALHM1	chr10	103448240	103463900
CALHM2_chr10_103441786_103457370	1/1	c0001	972	422	67	73	213	18	49	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0002	972	27	25	2	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0003	972	3	0	0	3	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0004	972	1	0	1	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0005	972	1	0	0	1	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0006	972	1	1	0	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0007	972	1	0	0	0	0	1	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0008	972	1	0	0	1	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM2_chr10_103441786_103457370	0/0	c0009	972	1	1	0	0	0	0	copy fasta	CALHM2	chr10	103441786	103457370
CALHM3_chr10_103467804_103484240	0/1	c0001	1035	318	47	58	160	11	41	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0002	1053	60	29	2	28	0	1	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	1/0	c0003	1035	51	16	15	10	7	2	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0004	1053	6	4	2	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0005	1035	6	0	0	6	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0006	1035	4	0	0	4	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0007	1035	1	0	1	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0008	1035	1	0	0	1	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0009	1035	1	0	0	1	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0010	1053	1	1	0	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM3_chr10_103467804_103484240	0/0	c0011	1053	1	1	0	0	0	0	copy fasta	CALHM3	chr10	103467804	103484240
CALHM4_chr6_116548751_116566127	0/0	c0001	945	148	22	34	76	6	10	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	1/1	c0002	945	122	55	13	28	7	17	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	c0003	945	103	7	13	67	5	11	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	c0004	945	28	8	8	11	0	1	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	c0005	945	3	0	0	0	0	3	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	c0006	945	2	0	0	2	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	c0007	945	1	0	0	1	0	0	copy fasta	CALHM4	chr6	116548751	116566127
CALHM4_chr6_116548751_116566127	0/0	c0008	945	1	0	0	1	0	0	copy fasta	CALHM4	chr6	116548751	116566127