JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CALHM5_chr6_116506639_116529788	1/1	c0001	930	394	87	65	178	18	44	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	c0002	930	3	0	0	3	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	c0003	930	1	0	0	1	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	c0004	930	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	c0005	930	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	c0006	930	1	0	1	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM5_chr6_116506639_116529788	0/0	c0007	930	1	1	0	0	0	0	copy fasta	CALHM5	chr6	116506639	116529788
CALHM6_chr6_116456375_116468771	0/0	c0001	948	139	7	15	92	6	19	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0002	948	133	12	30	77	6	8	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	1/0	c0003	948	94	52	11	17	5	8	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0004	948	27	7	8	10	0	2	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/1	c0005	948	16	0	2	4	0	9	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0006	948	10	9	0	0	1	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0007	948	6	6	0	0	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0008	948	5	0	4	0	0	1	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0009	948	4	0	0	4	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0010	948	2	0	0	2	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0011	948	1	0	0	1	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0012	948	1	0	0	1	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0013	948	1	0	0	0	0	1	copy fasta	CALHM6	chr6	116456375	116468771
CALHM6_chr6_116456375_116468771	0/0	c0014	948	1	1	0	0	0	0	copy fasta	CALHM6	chr6	116456375	116468771
CALM1_chr14_90392029_90413268	1/1	c0001	450	406	96	81	171	12	44	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	c0002	450	1	0	1	0	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM1_chr14_90392029_90413268	0/0	c0003	447	1	0	0	1	0	0	copy fasta	CALM1	chr14	90392029	90413268
CALM2_chr2_47155084_47181511	1/1	c0001	450	429	93	74	200	14	46	copy fasta	CALM2	chr2	47155084	47181511
CALM2_chr2_47155084_47181511	0/0	c0002	450	3	3	0	0	0	0	copy fasta	CALM2	chr2	47155084	47181511
CALM3_chr19_46596330_46615782	1/1	c0001	450	415	87	80	186	18	42	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	c0002	450	4	4	0	0	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	c0003	450	1	1	0	0	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	c0004	450	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALM3_chr19_46596330_46615782	0/0	c0005	450	1	0	0	1	0	0	copy fasta	CALM3	chr19	46596330	46615782
CALML3_chr10_5519961_5531771	1/0	c0001	450	236	48	57	86	13	31	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/1	c0002	450	205	42	25	115	5	17	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	c0003	450	8	3	0	5	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	c0004	450	1	0	0	1	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	c0005	450	1	0	0	1	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML3_chr10_5519961_5531771	0/0	c0006	450	1	1	0	0	0	0	copy fasta	CALML3	chr10	5519961	5531771
CALML4_chr15_68185705_68210332	1/1	c0001	462	375	95	69	153	14	42	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	c0002	462	9	0	0	9	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	c0003	462	1	1	0	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML4_chr15_68185705_68210332	0/0	c0004	462	1	0	1	0	0	0	copy fasta	CALML4	chr15	68185705	68210332
CALML5_chr10_5493697_5504570	1/1	c0001	441	279	44	47	145	10	31	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	c0002	441	111	41	18	36	6	10	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	c0003	441	45	5	7	26	2	5	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	c0004	441	5	1	2	2	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	c0005	441	2	2	0	0	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	c0006	441	1	0	0	1	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML5_chr10_5493697_5504570	0/0	c0007	441	1	1	0	0	0	0	copy fasta	CALML5	chr10	5493697	5504570
CALML6_chr1_1910260_1922296	1/1	c0001	546	308	50	70	136	16	34	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0002	546	61	26	8	19	0	8	copy fasta	CALML6	chr1	1910260	1922296