JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CALML6_chr1_1910260_1922296	0/0	c0003	546	6	6	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0004	546	6	0	0	6	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0005	546	3	3	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0006	546	3	3	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0007	546	2	0	0	0	0	2	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0008	546	2	2	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0009	546	1	1	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0010	546	1	0	0	1	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALML6_chr1_1910260_1922296	0/0	c0011	546	1	1	0	0	0	0	copy fasta	CALML6	chr1	1910260	1922296
CALN1_chr7_71774491_72417338	0/0	c0001	786	142	58	34	32	6	12	copy fasta	CALN1	chr7	71774491	72417338
CALR3_chr19_16474061_16501167	0/1	c0001	1155	187	31	41	83	9	22	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	1/0	c0002	1155	91	24	8	50	3	5	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0003	1155	56	15	11	21	2	7	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0004	1155	18	4	12	2	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0005	1155	5	5	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0006	1155	3	3	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0007	1155	2	2	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0009	1155	1	1	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0010	1155	1	0	0	1	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0011	1155	1	1	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0012	1155	1	0	1	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0013	1155	1	1	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0014	1155	1	0	1	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR3_chr19_16474061_16501167	0/0	c0015	1155	1	1	0	0	0	0	copy fasta	CALR3	chr19	16474061	16501167
CALR_chr19_12933609_12949489	1/1	c0001	1254	342	96	72	120	16	36	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	c0002	1254	3	0	0	3	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	c0003	1254	1	0	1	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	c0004	1254	1	1	0	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	c0005	1254	1	0	1	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	c0006	1254	1	1	0	0	0	0	copy fasta	CALR	chr19	12933609	12949489
CALR_chr19_12933609_12949489	0/0	c0007	1254	1	0	0	1	0	0	copy fasta	CALR	chr19	12933609	12949489
CALU_chr7_128734359_128778400	1/1	c0001	948	275	68	72	93	11	29	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	c0002	948	62	16	10	26	3	7	copy fasta	CALU	chr7	128734359	128778400
CALU_chr7_128734359_128778400	0/0	c0003	948	1	0	0	1	0	0	copy fasta	CALU	chr7	128734359	128778400
CALY_chr10_133319072_133341896	1/1	c0001	654	231	71	46	68	14	30	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	c0002	654	17	15	0	2	0	0	copy fasta	CALY	chr10	133319072	133341896
CALY_chr10_133319072_133341896	0/0	c0003	654	2	2	0	0	0	0	copy fasta	CALY	chr10	133319072	133341896
CAMK1D_chr10_12344547_12840545	0/0	c0001	1158	165	47	34	58	4	22	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	c0002	1158	47	23	6	11	2	5	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1D_chr10_12344547_12840545	0/0	c0003	1158	2	0	0	1	0	1	copy fasta	CAMK1D	chr10	12344547	12840545
CAMK1G_chr1_209578714_209618939	0/0	c0001	1431	190	31	34	99	6	20	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	1/1	c0002	1431	156	16	26	80	9	23	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0003	1431	42	28	8	6	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0004	1431	35	3	10	18	3	1	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0005	1431	13	12	1	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0006	1431	3	3	0	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0007	1431	2	2	0	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0008	1431	2	2	0	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0009	1431	1	0	1	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939