JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAMK1G_chr1_209578714_209618939	0/0	c0010	1431	1	1	0	0	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1G_chr1_209578714_209618939	0/0	c0011	1431	1	0	0	1	0	0	copy fasta	CAMK1G	chr1	209578714	209618939
CAMK1_chr3_9752347_9774947	1/1	c0001	1113	423	96	74	198	15	38	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	c0002	1113	2	0	0	2	0	0	copy fasta	CAMK1	chr3	9752347	9774947
CAMK1_chr3_9752347_9774947	0/0	c0003	1113	1	0	0	0	1	0	copy fasta	CAMK1	chr3	9752347	9774947
CAMK2A_chr5_150214491_150294773	0/1	c0001	1470	295	94	53	108	11	28	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	1/0	c0002	1470	33	0	4	23	1	4	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	c0003	1470	5	0	0	5	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	c0004	1470	2	0	0	2	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	c0005	1470	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	c0006	1470	1	1	0	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2A_chr5_150214491_150294773	0/0	c0007	1470	1	0	1	0	0	0	copy fasta	CAMK2A	chr5	150214491	150294773
CAMK2B_chr7_44212154_44330594	1/1	c0001	2001	73	30	20	17	2	2	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0002	2001	53	6	6	22	5	14	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0003	2001	28	2	9	5	3	9	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0004	2001	26	13	2	7	0	4	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0005	2001	20	8	1	8	1	2	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0006	2001	7	0	0	6	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0007	2001	6	0	3	2	1	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0008	2001	6	0	2	2	0	2	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0009	2001	4	1	1	1	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0010	2001	3	3	0	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0011	2001	3	2	0	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0012	2001	2	0	2	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0013	2001	2	0	0	0	2	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0014	2001	2	1	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0015	2001	2	0	1	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0016	1954	1	0	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0017	2001	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0018	2001	1	0	0	1	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0019	2001	1	0	1	0	0	0	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2B_chr7_44212154_44330594	0/0	c0020	2001	1	0	0	0	0	1	copy fasta	CAMK2B	chr7	44212154	44330594
CAMK2D_chr4_113446032_113766738	1/1	c0001	1602	266	86	37	118	2	21	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	c0002	1602	4	0	0	4	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	c0003	1602	3	3	0	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	c0004	1602	1	0	0	0	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	c0005	1602	1	1	0	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	c0006	1602	1	0	0	0	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	c0007	1602	1	0	1	0	0	0	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2D_chr4_113446032_113766738	0/0	c0008	1602	1	0	0	0	0	1	copy fasta	CAMK2D	chr4	113446032	113766738
CAMK2G_chr10_73807501_73879555	1/1	c0001	1767	215	58	23	110	5	17	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	c0002	1767	60	12	14	19	3	12	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	c0003	1767	2	0	0	2	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	c0004	1767	1	0	0	1	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	c0005	1767	1	0	1	0	0	0	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2G_chr10_73807501_73879555	0/0	c0006	1767	1	0	0	0	0	1	copy fasta	CAMK2G	chr10	73807501	73879555
CAMK2N1_chr1_20477391_20491210	1/1	c0001	237	422	86	76	192	18	48	copy fasta	CAMK2N1	chr1	20477391	20491210
CAMK2N2_chr3_184254213_184266553	1/1	c0001	240	365	79	64	164	16	40	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK2N2_chr3_184254213_184266553	0/0	c0002	240	15	13	2	0	0	0	copy fasta	CAMK2N2	chr3	184254213	184266553
CAMK4_chr5_111219384_111499886	0/1	c0001	1422	179	78	33	41	9	17	copy fasta	CAMK4	chr5	111219384	111499886