JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAMK4_chr5_111219384_111499886	1/0	c0002	1422	54	0	5	35	1	12	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	c0003	1422	6	4	2	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	c0004	1422	5	5	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	c0005	1422	1	1	0	0	0	0	copy fasta	CAMK4	chr5	111219384	111499886
CAMK4_chr5_111219384_111499886	0/0	c0006	1422	1	0	0	0	0	1	copy fasta	CAMK4	chr5	111219384	111499886
CAMKK1_chr17_3855315_3898053	0/1	c0001	1518	176	6	46	94	2	27	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	1/0	c0002	1518	166	39	14	96	5	11	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0003	1518	61	22	19	1	9	10	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0004	1518	25	24	1	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0005	1518	3	3	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0006	1518	2	0	0	2	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0007	1518	2	0	0	0	0	2	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0008	1518	2	0	2	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0009	1518	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0010	1518	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0011	1518	1	0	0	1	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0012	1518	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0013	1518	1	0	0	1	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0014	1518	1	0	1	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0015	1518	1	0	0	1	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0016	1518	1	0	1	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK1_chr17_3855315_3898053	0/0	c0017	1518	1	1	0	0	0	0	copy fasta	CAMKK1	chr17	3855315	3898053
CAMKK2_chr12_121232692_121301709	1/1	c0001	1767	95	5	20	51	4	13	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0002	1767	57	23	19	3	4	8	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0003	1767	52	4	16	22	2	8	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0004	1767	35	7	2	25	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0005	1767	13	12	0	0	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0006	1767	13	0	0	13	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0007	1767	10	9	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0008	1767	10	0	0	5	0	5	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0009	1767	8	8	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0010	1767	7	1	0	6	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0011	1767	6	5	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0012	1767	4	0	1	0	3	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0013	1767	3	3	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0014	1767	2	0	1	0	1	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0015	1767	2	2	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0016	1767	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0017	1767	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0018	1767	1	0	1	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0019	1767	1	0	0	0	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0020	1767	1	0	0	1	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0021	1767	1	0	0	0	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0022	1767	1	0	0	0	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0023	1767	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0024	1767	1	0	0	1	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0025	1767	1	0	0	1	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0026	1767	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0027	1767	1	0	0	0	0	1	copy fasta	CAMKK2	chr12	121232692	121301709
CAMKK2_chr12_121232692_121301709	0/0	c0028	1767	1	1	0	0	0	0	copy fasta	CAMKK2	chr12	121232692	121301709