Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AAMP_chr2_218259129_218275137	1/1	c0001	1305	369	89	75	152	16	35	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0002	1305	18	0	5	12	0	1	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0003	1305	3	3	0	0	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0004	1305	2	0	0	2	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0005	1305	2	0	0	2	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0006	1305	2	0	0	2	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0007	1305	1	0	0	0	0	1	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0008	1305	1	1	0	0	0	0	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0009	1305	1	0	0	0	0	1	copy fasta	AAMP	chr2	218259129	218275137
AAMP_chr2_218259129_218275137	0/0	c0010	1305	1	1	0	0	0	0	copy fasta	AAMP	chr2	218259129	218275137
AANAT_chr17_76462603_76475117	1/1	c0001	624	402	88	76	176	16	44	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0002	624	7	0	0	7	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0003	624	3	0	0	3	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0004	624	3	0	0	3	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0005	624	2	1	1	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0006	624	1	0	1	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0007	624	1	1	0	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0008	624	1	0	0	0	0	1	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0009	624	1	0	0	1	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0010	624	1	0	0	1	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0011	624	1	1	0	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0012	624	1	0	0	1	0	0	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0013	624	1	0	0	0	0	1	copy fasta	AANAT	chr17	76462603	76475117
AANAT_chr17_76462603_76475117	0/0	c0014	624	1	1	0	0	0	0	copy fasta	AANAT	chr17	76462603	76475117
AAR2_chr20_36231478_36261933	1/1	c0001	1155	233	34	53	108	10	26	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0002	1155	52	44	8	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0003	1155	4	0	0	4	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0004	1155	3	3	0	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0005	1155	2	0	0	2	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0006	1155	1	0	0	1	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0007	1155	1	1	0	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	AAR2	chr20	36231478	36261933
AAR2_chr20_36231478_36261933	0/0	c0009	1155	1	0	1	0	0	0	copy fasta	AAR2	chr20	36231478	36261933
AARD_chr8_116933207_116949487	1/1	c0001	468	299	47	49	168	7	26	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	c0002	468	117	34	24	31	6	22	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	c0003	468	9	0	0	9	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	c0004	468	7	7	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	c0005	462	4	4	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	c0006	468	4	0	3	0	1	0	copy fasta	AARD	chr8	116933207	116949487
AARD_chr8_116933207_116949487	0/0	c0007	468	2	2	0	0	0	0	copy fasta	AARD	chr8	116933207	116949487
AARS1_chr16_70247298_70294506	0/1	c0001	2907	153	33	25	77	6	11	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0002	2907	129	18	29	62	4	16	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	1/0	c0003	2907	36	1	15	6	4	9	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0004	2907	24	23	1	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0005	2907	4	4	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0006	2907	2	0	1	0	0	1	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0007	2907	2	0	2	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0008	2907	1	1	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0009	2907	1	1	0	0	0	0	copy fasta	AARS1	chr16	70247298	70294506
AARS1_chr16_70247298_70294506	0/0	c0010	2907	1	0	0	1	0	0	copy fasta	AARS1	chr16	70247298	70294506