Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACHE_chr7_100884994_100900888	0/1	c0010	1845	1	0	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0011	1845	1	1	0	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0012	1845	1	0	0	1	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0013	1845	1	0	0	1	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0014	1845	1	0	0	1	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0015	1845	1	0	1	0	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACHE_chr7_100884994_100900888	0/0	c0016	1845	1	0	0	1	0	0	copy fasta	ACHE	chr7	100884994	100900888
ACIN1_chr14_23053564_23100136	0/0	c0001	3852	116	19	27	53	3	14	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0002	3858	50	24	6	6	0	14	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/1	c0003	3858	48	1	9	35	1	1	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0004	3855	37	0	7	29	1	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0005	3858	16	16	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0006	3858	16	7	7	0	0	2	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0007	3852	13	3	0	7	0	3	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0008	3858	10	1	4	0	1	4	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0009	3855	7	6	1	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0010	3855	5	0	0	4	0	1	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0011	3864	4	4	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0012	3852	3	0	0	3	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0013	3855	3	0	0	3	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0014	3858	3	3	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0015	3855	3	3	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0016	3858	2	2	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0017	3855	2	2	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0018	3855	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0019	3855	1	1	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0020	3849	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0021	3855	1	1	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0022	3855	1	0	1	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0023	3852	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0024	3852	1	0	0	0	0	1	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0025	3852	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	1/0	c0026	3852	1	0	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0027	3852	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0028	3858	1	0	0	1	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACIN1_chr14_23053564_23100136	0/0	c0029	3864	1	1	0	0	0	0	copy fasta	ACIN1	chr14	23053564	23100136
ACKR1_chr1_159199875_159211500	1/0	c0001	1011	250	1	31	180	5	32	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/1	c0002	1011	158	82	35	23	5	12	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	c0003	1011	16	1	8	0	4	3	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	c0004	1011	15	0	3	11	0	1	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	c0005	1011	6	0	2	0	2	2	copy fasta	ACKR1	chr1	159199875	159211500
ACKR1_chr1_159199875_159211500	0/0	c0006	1011	1	0	1	0	0	0	copy fasta	ACKR1	chr1	159199875	159211500
ACKR2_chr3_42804445_42872286	1/1	c0001	1155	193	67	31	64	6	23	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	c0002	1155	127	17	27	59	4	20	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	c0003	1155	13	3	1	9	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	c0004	1155	3	0	0	1	2	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	c0005	1155	2	2	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	c0006	1155	1	1	0	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	c0007	1155	1	0	1	0	0	0	copy fasta	ACKR2	chr3	42804445	42872286
ACKR2_chr3_42804445_42872286	0/0	c0008	1155	1	0	0	0	0	1	copy fasta	ACKR2	chr3	42804445	42872286