JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAMKMT_chr2_44356947_44777592	0/0	c0001	972	193	77	30	62	2	22	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	c0002	972	3	3	0	0	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	c0003	972	1	1	0	0	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKMT_chr2_44356947_44777592	0/0	c0004	972	1	1	0	0	0	0	copy fasta	CAMKMT	chr2	44356947	44777592
CAMKV_chr3_49852989_49874906	1/0	c0001	1506	188	26	41	80	9	31	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/1	c0002	1506	97	28	24	33	4	7	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	c0003	1506	47	38	3	3	1	2	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	c0004	1506	2	0	0	0	0	2	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	c0005	1506	2	2	0	0	0	0	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	c0006	1506	1	0	1	0	0	0	copy fasta	CAMKV	chr3	49852989	49874906
CAMKV_chr3_49852989_49874906	0/0	c0007	1506	1	0	1	0	0	0	copy fasta	CAMKV	chr3	49852989	49874906
CAMLG_chr5_134733548_134757157	0/0	c0001	891	271	84	51	98	10	28	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	c0002	891	85	1	13	66	1	4	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	c0003	891	3	0	0	3	0	0	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	c0004	891	3	3	0	0	0	0	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	c0005	891	2	0	0	0	0	2	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	c0006	891	1	0	0	1	0	0	copy fasta	CAMLG	chr5	134733548	134757157
CAMLG_chr5_134733548_134757157	0/0	c0007	891	1	0	0	0	1	0	copy fasta	CAMLG	chr5	134733548	134757157
CAMP_chr3_48218495_48230485	1/1	c0001	513	337	76	73	133	16	37	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	c0002	513	2	0	0	0	0	2	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	c0003	513	2	0	0	2	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	c0004	513	1	1	0	0	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	c0005	513	1	0	0	1	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	c0006	513	1	0	1	0	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	c0007	513	1	1	0	0	0	0	copy fasta	CAMP	chr3	48218495	48230485
CAMP_chr3_48218495_48230485	0/0	c0008	513	1	0	0	0	0	1	copy fasta	CAMP	chr3	48218495	48230485
CAMSAP1_chr9_135803487_135912546	1/1	c0001	4809	223	47	36	104	11	23	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0002	4809	40	18	9	0	2	11	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0003	4809	13	0	0	13	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0004	4809	7	0	0	7	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0005	4809	7	1	4	0	1	1	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0006	4809	6	0	0	6	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0007	4809	5	5	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0008	4809	5	4	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0009	4809	4	4	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0010	4809	3	0	3	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0011	4809	3	0	0	2	0	1	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0012	4809	3	0	3	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0013	4809	2	0	0	0	0	2	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0014	4821	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0015	4809	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0016	4809	1	0	0	0	1	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0017	4809	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0018	4809	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0019	4809	1	0	0	0	1	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0020	4809	1	0	0	0	0	1	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0021	4809	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0022	4809	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0023	4809	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0024	4809	1	0	0	1	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546