JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAMSAP1_chr9_135803487_135912546	0/0	c0025	4809	1	0	0	1	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0026	4809	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0027	4809	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0028	4809	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0029	4809	1	0	0	0	0	1	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0030	4809	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0031	4809	1	0	1	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP1_chr9_135803487_135912546	0/0	c0032	4809	1	1	0	0	0	0	copy fasta	CAMSAP1	chr9	135803487	135912546
CAMSAP2_chr1_200733893_200865704	1/1	c0001	4437	255	58	50	108	13	24	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0002	4437	96	18	17	51	1	9	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0003	4437	4	0	0	4	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0004	4437	3	1	1	0	0	1	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0005	4437	2	2	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0006	4437	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0007	4437	1	0	0	1	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0008	4437	1	0	1	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0009	4437	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0010	4437	1	1	0	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP2_chr1_200733893_200865704	0/0	c0011	4437	1	0	1	0	0	0	copy fasta	CAMSAP2	chr1	200733893	200865704
CAMSAP3_chr19_7590863_7623304	1/1	c0001	3750	286	49	57	129	12	37	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0002	3750	18	9	6	1	2	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0003	3750	16	14	2	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0004	3750	5	0	0	5	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0005	3750	5	5	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0006	3750	4	3	0	0	0	1	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0007	3750	3	0	3	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0008	3750	3	3	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0009	3750	3	3	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0010	3750	2	2	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0011	3750	1	1	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0012	3750	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0013	3750	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0014	3750	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0015	3750	1	0	1	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0016	3750	1	1	0	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0017	3750	1	0	1	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0018	3750	1	0	0	0	0	1	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0019	3750	1	0	1	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0020	3750	1	0	0	0	0	1	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0021	3750	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0022	3750	1	0	0	1	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMSAP3_chr19_7590863_7623304	0/0	c0023	3750	1	0	1	0	0	0	copy fasta	CAMSAP3	chr19	7590863	7623304
CAMTA1_chr1_6780454_7774706	0/0	c0001	5022	27	15	5	5	0	2	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0002	5022	7	7	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0003	5022	6	4	0	2	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0004	5022	3	0	1	1	1	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0005	5022	2	1	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0006	5022	2	2	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0007	5022	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0008	5022	1	0	1	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706