JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAMTA1_chr1_6780454_7774706	0/0	c0009	5022	1	0	0	0	0	1	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0010	5022	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0011	5022	1	0	0	0	1	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0012	5022	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0013	5022	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0014	5022	1	0	0	0	0	1	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0015	5022	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0016	5022	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA1_chr1_6780454_7774706	0/0	c0017	5022	1	1	0	0	0	0	copy fasta	CAMTA1	chr1	6780454	7774706
CAMTA2_chr17_4962997_4992675	0/0	c0001	3609	131	52	29	31	4	15	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	1/0	c0002	3609	107	2	10	69	5	20	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0003	3609	44	1	4	37	1	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0004	3609	44	12	13	18	0	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/1	c0005	3609	27	2	5	14	4	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0006	3609	3	3	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0007	3609	2	2	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0008	3609	2	0	1	0	1	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0009	3609	2	0	0	2	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0010	3609	2	1	1	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0011	3609	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0012	3609	1	0	0	0	0	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0013	3609	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0014	3609	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0015	3609	1	0	0	0	1	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0016	3609	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0017	3609	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0018	3609	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0019	3609	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0020	3609	1	0	1	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0021	3609	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0022	3609	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0023	3609	1	0	0	0	0	1	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0024	3609	1	0	0	1	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0025	3609	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAMTA2_chr17_4962997_4992675	0/0	c0026	3609	1	1	0	0	0	0	copy fasta	CAMTA2	chr17	4962997	4992675
CAND1_chr12_67264358_67324953	1/1	c0001	3693	201	59	25	87	3	25	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0002	3693	103	11	22	52	6	12	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0003	3693	7	1	2	0	3	1	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0004	3693	6	6	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0005	3693	3	3	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0006	3693	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0007	3693	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0008	3693	1	0	1	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0009	3693	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0010	3693	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0011	3693	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0012	3693	1	0	0	1	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND1_chr12_67264358_67324953	0/0	c0013	3693	1	1	0	0	0	0	copy fasta	CAND1	chr12	67264358	67324953
CAND2_chr3_12791680_12839803	1/0	c0001	3711	44	0	7	31	0	5	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0002	3711	40	11	10	11	2	6	copy fasta	CAND2	chr3	12791680	12839803