JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAND2_chr3_12791680_12839803	0/0	c0003	3711	39	15	6	10	4	4	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0004	3711	34	0	3	24	1	6	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0005	3711	31	17	7	6	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0006	3711	26	1	11	6	2	6	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0007	3711	22	21	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0008	3711	13	0	1	10	0	2	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0009	3711	12	1	0	9	1	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0010	3711	10	0	0	10	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0011	3711	8	8	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0012	3711	8	1	3	2	2	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0013	3711	7	0	3	0	0	4	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0014	3711	5	0	0	5	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0015	3711	5	0	2	3	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0016	3711	4	0	0	4	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0017	3711	4	4	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0018	3711	4	0	1	3	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0019	3711	3	3	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/1	c0020	3711	3	0	2	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0021	3711	3	0	0	3	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0022	3711	3	0	0	3	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0023	3711	2	0	2	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0024	3711	2	2	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0025	3711	2	1	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0026	3711	2	0	0	2	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0027	3711	2	0	0	1	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0028	3711	2	0	0	0	0	2	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0029	3711	2	0	0	2	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0030	3711	2	0	2	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0031	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0032	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0033	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0034	3711	1	0	0	0	1	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0035	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0036	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0037	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0038	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0039	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0040	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0041	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0042	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0043	3711	1	0	0	0	1	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0044	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0045	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0046	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0047	3711	1	1	0	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0048	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0049	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0050	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0051	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0052	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803