JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAND2_chr3_12791680_12839803	0/0	c0053	3711	1	0	0	0	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0054	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0055	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0056	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0057	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0058	3711	1	0	0	0	0	1	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0059	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0060	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0061	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0062	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0063	3711	1	0	1	0	0	0	copy fasta	CAND2	chr3	12791680	12839803
CAND2_chr3_12791680_12839803	0/0	c0064	3711	1	0	0	1	0	0	copy fasta	CAND2	chr3	12791680	12839803
CANT1_chr17_78986716_79014764	1/1	c0001	1206	185	47	39	74	9	14	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	c0002	1206	157	30	27	80	6	14	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	c0003	1206	43	2	0	36	1	4	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	c0004	1206	5	5	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	c0005	1206	2	2	0	0	0	0	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	c0006	1206	1	0	0	0	0	1	copy fasta	CANT1	chr17	78986716	79014764
CANT1_chr17_78986716_79014764	0/0	c0007	1206	1	0	0	0	0	1	copy fasta	CANT1	chr17	78986716	79014764
CANX_chr5_179693967_179736641	1/1	c0001	1779	353	80	64	159	16	32	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0002	1779	10	0	0	10	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0003	1779	10	9	1	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0004	1779	2	0	0	2	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0005	1779	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0006	1779	1	0	0	1	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0007	1779	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0008	1779	1	1	0	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CANX_chr5_179693967_179736641	0/0	c0009	1779	1	0	1	0	0	0	copy fasta	CANX	chr5	179693967	179736641
CAP1_chr1_40035729_40077648	0/1	c0001	1428	360	82	46	174	16	41	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	c0002	1428	9	9	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	c0003	1428	2	2	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	c0004	1428	2	2	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	c0005	1428	2	2	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	c0006	1428	1	0	0	0	0	1	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	1/0	c0007	1428	1	0	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP1_chr1_40035729_40077648	0/0	c0008	1428	1	1	0	0	0	0	copy fasta	CAP1	chr1	40035729	40077648
CAP2_chr6_17388595_17562780	0/0	c0001	1434	98	22	21	35	3	17	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	1/1	c0002	1434	62	20	17	9	5	9	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0003	1434	12	11	1	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0004	1434	6	2	1	3	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0005	1434	5	0	0	4	0	1	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0006	1434	5	0	0	5	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0007	1434	5	3	2	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0008	1434	3	3	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0009	1434	2	2	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0010	1434	2	1	1	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0011	1434	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0013	1434	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0014	1434	1	0	1	0	0	0	copy fasta	CAP2	chr6	17388595	17562780