JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAP2_chr6_17388595_17562780	0/0	c0015	1434	1	1	0	0	0	0	copy fasta	CAP2	chr6	17388595	17562780
CAP2_chr6_17388595_17562780	0/0	c0016	1434	1	0	0	0	0	1	copy fasta	CAP2	chr6	17388595	17562780
CAPG_chr2_85389753_85415366	1/0	c0001	1047	161	21	43	68	6	22	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/1	c0002	1047	139	31	17	76	3	11	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0003	1047	65	29	7	15	4	10	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0004	1047	19	6	5	5	1	2	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0005	1047	11	0	0	11	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0006	1047	9	0	1	2	3	3	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0007	1047	1	0	0	0	1	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0008	1047	1	0	1	0	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0009	1047	1	0	1	0	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0010	1047	1	1	0	0	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0011	1047	1	0	1	0	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPG_chr2_85389753_85415366	0/0	c0012	1047	1	0	0	1	0	0	copy fasta	CAPG	chr2	85389753	85415366
CAPN10_chr2_240581734_240604104	0/1	c0001	2019	163	30	34	69	8	21	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0002	2019	142	51	24	53	3	11	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0003	2019	51	5	13	18	1	14	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0004	2019	10	0	0	10	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0005	2019	7	6	1	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0006	2019	6	0	0	6	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0007	2019	6	0	5	0	1	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0008	2019	3	3	0	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	1/0	c0009	2019	3	0	2	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0010	2019	2	0	0	2	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0011	2019	2	2	0	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0012	2019	2	2	0	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0013	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0014	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0015	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0016	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0017	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0018	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0019	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0020	2019	1	0	0	0	1	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0021	2019	1	1	0	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0022	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0023	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0024	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0025	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0026	2019	1	0	1	0	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN10_chr2_240581734_240604104	0/0	c0027	2019	1	0	0	1	0	0	copy fasta	CAPN10	chr2	240581734	240604104
CAPN11_chr6_44153820_44189401	1/1	c0001	2220	162	18	40	78	5	19	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0002	2220	81	0	2	75	0	4	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0003	2220	66	40	16	1	4	5	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0004	2220	64	10	13	21	6	14	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0005	2220	16	0	0	15	1	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0006	2227	14	12	1	0	1	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0007	2220	11	4	0	7	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0008	2220	9	8	0	0	1	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0009	2220	7	0	0	7	0	0	copy fasta	CAPN11	chr6	44153820	44189401