JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPN11_chr6_44153820_44189401	0/0	c0010	2227	6	1	3	0	0	2	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0011	2220	6	0	0	5	0	1	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0012	2220	4	4	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0013	2220	2	0	1	0	0	1	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0014	2220	2	0	0	2	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0015	2220	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0016	2220	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0017	2220	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0018	2220	1	1	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0019	2220	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0020	2220	1	0	1	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0021	2227	1	1	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0022	2220	1	0	1	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0023	2220	1	1	0	0	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN11_chr6_44153820_44189401	0/0	c0024	43	1	0	0	1	0	0	copy fasta	CAPN11	chr6	44153820	44189401
CAPN12_chr19_38725192_38749474	0/1	c0001	2160	127	26	19	57	7	17	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	1/0	c0002	2160	59	1	15	35	4	3	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0003	2160	39	36	1	2	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0004	2160	24	7	11	0	2	4	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0005	2160	22	3	6	4	3	6	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0006	2160	15	0	0	15	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0007	2160	8	0	1	7	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0008	2161	7	1	0	3	0	3	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0009	2160	4	4	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0010	2161	4	0	0	3	0	1	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0011	2160	3	3	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0012	2160	2	0	0	2	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0013	2160	2	1	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0014	2160	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0015	2160	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0016	2160	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0017	2161	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0018	2161	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0019	2160	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0020	2160	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0021	2160	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0022	2135	1	0	0	0	0	1	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0023	2160	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0024	2160	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0025	1939	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0026	2160	1	0	0	0	0	1	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0027	2161	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0028	2160	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0029	2160	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0030	2160	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0031	2160	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0032	2160	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0033	2160	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0034	2160	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0035	2102	1	0	1	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474