JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPN12_chr19_38725192_38749474	0/0	c0036	2160	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0037	2161	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0038	2160	1	1	0	0	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN12_chr19_38725192_38749474	0/0	c0039	2160	1	0	0	1	0	0	copy fasta	CAPN12	chr19	38725192	38749474
CAPN13_chr2_30717771_30812446	0/1	c0001	2010	163	69	17	50	7	19	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0002	2010	94	12	25	47	4	6	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	1/0	c0003	2010	60	4	13	31	1	10	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0004	2010	30	0	4	22	1	3	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0005	2010	11	0	1	10	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0006	2010	8	0	4	0	3	1	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0007	2010	3	0	0	3	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0008	2010	2	2	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0009	2010	1	0	0	0	0	1	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0010	2010	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0011	2010	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0012	2010	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0013	2010	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0014	2010	1	0	1	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0015	2010	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0016	2010	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0017	2010	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0018	2010	1	0	1	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0019	2010	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0020	2010	1	0	0	1	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN13_chr2_30717771_30812446	0/0	c0021	2010	1	1	0	0	0	0	copy fasta	CAPN13	chr2	30717771	30812446
CAPN14_chr2_31168056_31222515	0/1	c0001	2055	100	11	29	40	4	15	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0002	2055	52	10	14	20	3	5	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0003	2055	32	7	2	21	2	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0004	2055	13	3	5	3	0	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0005	2055	10	9	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0006	2055	10	9	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0007	2055	9	1	1	4	1	2	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0008	2055	7	0	0	6	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0009	2055	7	4	0	3	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0010	2055	6	6	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	1/0	c0011	2055	6	4	0	0	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0012	2055	6	4	0	1	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0013	2055	5	0	1	2	1	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0014	2055	5	1	4	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0015	2055	5	5	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0016	2052	4	0	0	4	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0017	2055	4	0	2	1	1	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0018	2055	3	3	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0019	2055	3	3	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0020	2055	3	0	0	2	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0021	2055	2	0	2	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0022	2055	2	0	0	2	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0023	2055	2	0	2	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0024	2055	2	1	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0025	2055	2	2	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515