JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPN14_chr2_31168056_31222515	0/0	c0026	2055	2	0	2	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0027	2055	2	2	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0028	2055	2	1	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0029	2055	2	2	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0030	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0031	2055	1	0	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0032	2055	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0033	2055	1	0	0	0	0	1	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0034	2055	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0035	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0036	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0037	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0038	2055	1	0	1	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0039	2055	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0040	2055	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0041	2055	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0042	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0043	2055	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0044	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0045	2055	1	0	0	1	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0046	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN14_chr2_31168056_31222515	0/0	c0047	2055	1	1	0	0	0	0	copy fasta	CAPN14	chr2	31168056	31222515
CAPN15_chr16_522712_559636	0/0	c0001	3261	84	20	18	33	0	13	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0002	3261	72	10	10	42	2	8	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	1/0	c0003	3261	35	5	15	6	5	3	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0004	3261	34	4	6	23	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/1	c0005	3261	30	8	1	17	0	3	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0006	3261	19	5	2	4	2	6	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0007	3261	14	2	5	3	4	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0008	3261	12	0	7	5	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0009	3261	7	0	2	2	2	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0010	3261	5	0	0	5	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0011	3261	4	3	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0012	3262	4	1	2	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0013	3261	4	0	0	4	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0014	3262	3	0	0	3	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0015	3262	3	1	1	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0016	3262	3	1	1	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0017	3261	3	2	1	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0018	3261	3	1	2	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0019	3261	3	3	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0020	3261	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0021	3261	2	0	1	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0022	3261	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0023	3261	2	0	0	0	0	2	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0024	3261	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0025	3261	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0026	3261	2	2	0	0	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0027	3261	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0028	3261	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636