JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPN15_chr16_522712_559636	0/0	c0079	3262	1	0	0	0	0	1	copy fasta	CAPN15	chr16	522712	559636
CAPN15_chr16_522712_559636	0/0	c0080	3261	1	0	0	1	0	0	copy fasta	CAPN15	chr16	522712	559636
CAPN1_chr11_65176928_65217006	1/0	c0001	2145	249	79	39	93	6	31	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0002	2145	85	5	18	47	4	11	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/1	c0003	2145	41	1	2	31	4	2	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0004	2145	3	3	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0005	2145	2	2	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0006	2145	2	0	2	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0007	2145	2	1	1	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0008	2145	2	0	2	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0009	2145	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0010	2145	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0011	2145	1	1	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0012	2145	1	1	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0013	2145	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0014	2145	1	1	0	0	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0015	2145	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN1_chr11_65176928_65217006	0/0	c0016	2145	1	0	0	1	0	0	copy fasta	CAPN1	chr11	65176928	65217006
CAPN2_chr1_223707539_223781018	0/1	c0001	2103	107	16	18	50	5	17	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0002	2103	72	35	18	19	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0003	2103	44	10	11	17	1	5	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0004	2103	24	1	9	7	4	3	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0005	2103	19	0	0	19	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0006	2103	16	0	4	12	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0007	2103	11	4	0	5	0	2	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0008	2103	11	0	0	11	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0009	2103	7	7	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0010	2103	5	1	0	2	1	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0011	2103	5	0	0	5	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0012	2103	4	0	0	4	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0013	2103	3	2	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0014	2103	3	3	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0015	2103	3	0	0	3	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0016	2103	3	0	1	1	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0017	2103	3	3	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0018	2103	2	2	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0019	2103	2	0	0	2	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0020	2103	2	1	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0021	2103	2	2	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0022	2103	2	2	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0023	2103	2	0	0	1	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0024	2103	2	0	0	2	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	1/0	c0025	2103	1	0	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0026	2103	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0027	2103	1	0	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0028	2103	1	0	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0029	2103	1	0	0	0	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0030	2103	1	0	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0031	2103	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0032	2103	1	0	0	0	0	1	copy fasta	CAPN2	chr1	223707539	223781018