JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPN2_chr1_223707539_223781018	0/0	c0033	2103	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0034	2103	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0035	2103	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0036	2103	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0037	2103	1	0	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0038	2103	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0039	2103	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0040	2103	1	0	1	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0041	2103	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0042	2103	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0043	2117	1	0	0	0	1	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0044	2103	1	0	0	0	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0045	2103	1	0	0	0	0	1	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0046	2103	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0047	2103	1	1	0	0	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN2_chr1_223707539_223781018	0/0	c0048	2103	1	0	0	1	0	0	copy fasta	CAPN2	chr1	223707539	223781018
CAPN3_chr15_42354501_42417317	1/1	c0001	2466	175	13	36	97	6	21	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0002	2466	63	45	5	11	0	2	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0003	2466	9	0	1	0	3	5	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0004	2466	8	0	5	1	1	1	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0005	2466	6	6	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0006	2466	4	4	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0007	2466	4	4	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0008	2466	4	4	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0009	2466	3	2	1	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0010	2466	3	0	1	0	0	2	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0011	2466	3	3	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0012	2466	3	3	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0013	2466	2	2	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0014	2466	2	2	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0015	2466	2	0	2	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0016	2466	2	2	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0017	2466	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0018	2466	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0019	2466	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0020	2466	1	0	1	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0021	2466	1	0	1	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0022	2466	1	1	0	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0023	2466	1	0	0	0	0	1	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0024	2466	1	0	0	1	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0025	2466	1	0	0	0	0	1	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0026	2466	1	0	0	0	0	1	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0027	2466	1	0	0	1	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0028	2466	1	0	0	1	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN3_chr15_42354501_42417317	0/0	c0029	2466	1	0	1	0	0	0	copy fasta	CAPN3	chr15	42354501	42417317
CAPN5_chr11_77061971_77131155	1/1	c0001	1923	335	63	69	150	10	41	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0002	1923	13	13	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0003	1923	8	7	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0004	1923	4	4	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0005	1923	3	0	0	3	0	0	copy fasta	CAPN5	chr11	77061971	77131155