JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPN5_chr11_77061971_77131155	0/0	c0006	1923	2	1	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0007	1923	2	0	0	0	2	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0008	1923	1	0	0	0	0	1	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0009	1923	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0010	1923	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0011	1923	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0012	1923	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0013	1923	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0014	1923	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0015	1923	1	0	1	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0016	1923	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0017	1923	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0018	1923	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0019	1923	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0020	1923	1	0	0	1	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0021	1923	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN5_chr11_77061971_77131155	0/0	c0022	1923	1	1	0	0	0	0	copy fasta	CAPN5	chr11	77061971	77131155
CAPN6_chrX_111240099_111275483	1/0	c0001	1926	180	30	30	93	7	19	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0002	1926	25	23	2	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0003	1926	20	19	1	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/1	c0004	1926	5	0	3	0	0	1	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0005	1926	4	4	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0006	1926	2	2	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0007	1926	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0008	1926	1	0	0	1	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0009	1926	1	1	0	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0010	1926	1	0	1	0	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0011	1926	1	0	0	1	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN6_chrX_111240099_111275483	0/0	c0012	1926	1	0	0	1	0	0	copy fasta	CAPN6	chrX	111240099	111275483
CAPN7_chr3_15201246_15257916	1/1	c0001	2442	342	88	45	164	11	32	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0002	2442	10	0	3	5	0	2	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0003	2442	10	0	8	0	0	2	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0004	2442	6	6	0	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0005	2442	4	0	1	0	1	2	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0006	2442	1	0	1	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0007	2442	1	0	1	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0008	2442	1	0	0	1	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN7_chr3_15201246_15257916	0/0	c0009	2442	1	0	1	0	0	0	copy fasta	CAPN7	chr3	15201246	15257916
CAPN9_chr1_230742388_230806989	1/0	c0001	2073	79	6	10	50	4	8	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0002	2073	69	8	11	47	1	2	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/1	c0003	2073	50	1	19	24	2	3	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0004	2073	37	14	6	5	2	10	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0005	2073	34	9	11	8	0	6	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0006	2073	34	7	8	15	2	2	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0007	2073	14	7	2	3	0	2	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0008	2073	12	0	0	10	0	2	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0009	2073	10	4	0	0	1	5	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0010	2073	8	8	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0011	2073	6	6	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0012	2073	6	5	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989