JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPN9_chr1_230742388_230806989	0/0	c0013	2073	4	4	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0014	2073	3	2	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0015	2073	2	2	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0016	2073	2	0	1	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0017	2073	2	0	0	2	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0018	2073	2	0	0	0	0	2	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0019	2073	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0020	2073	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0021	2073	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0022	2073	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0023	2073	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0024	2073	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0025	2073	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0026	2073	1	0	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0027	2073	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0028	2073	1	0	0	0	0	1	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0029	2073	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0030	2073	1	1	0	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0031	2073	1	0	1	0	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0032	2073	1	0	0	0	0	1	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0033	2073	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0034	2073	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0035	2073	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0036	2073	1	0	0	0	0	1	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0037	2073	1	0	0	1	0	0	copy fasta	CAPN9	chr1	230742388	230806989
CAPN9_chr1_230742388_230806989	0/0	c0038	2073	1	0	0	0	0	1	copy fasta	CAPN9	chr1	230742388	230806989
CAPNS1_chr19_36135066_36155353	1/1	c0001	807	435	89	60	224	16	44	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0002	807	30	0	19	5	2	4	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0003	810	4	1	1	1	0	1	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0004	795	3	2	0	1	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0005	807	2	1	1	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0006	807	2	2	0	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0007	810	1	0	1	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0008	825	1	1	0	0	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0009	807	1	0	0	1	0	0	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS1_chr19_36135066_36155353	0/0	c0010	807	1	0	0	0	0	1	copy fasta	CAPNS1	chr19	36135066	36155353
CAPNS2_chr16_55561684_55572687	1/1	c0001	747	261	56	41	132	6	24	copy fasta	CAPNS2	chr16	55561684	55572687
CAPNS2_chr16_55561684_55572687	0/0	c0002	747	146	28	24	68	8	18	copy fasta	CAPNS2	chr16	55561684	55572687
CAPNS2_chr16_55561684_55572687	0/0	c0003	747	4	4	0	0	0	0	copy fasta	CAPNS2	chr16	55561684	55572687
CAPNS2_chr16_55561684_55572687	0/0	c0004	747	1	0	1	0	0	0	copy fasta	CAPNS2	chr16	55561684	55572687
CAPRIN1_chr11_34046731_34107610	1/1	c0001	2130	243	89	47	69	6	30	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	c0002	2130	1	0	1	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	c0003	2130	1	0	0	1	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN1_chr11_34046731_34107610	0/0	c0004	2130	1	1	0	0	0	0	copy fasta	CAPRIN1	chr11	34046731	34107610
CAPRIN2_chr12_30704553_30759951	1/0	c0001	3138	127	10	26	74	3	13	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0002	3138	103	58	16	9	2	18	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0003	3138	89	6	13	62	3	5	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0004	3138	23	0	0	23	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0005	3138	8	8	0	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0006	3138	5	5	0	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951