JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPRIN2_chr12_30704553_30759951	0/1	c0007	3138	5	0	2	0	0	2	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0008	3138	4	0	3	0	0	1	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0009	3138	3	3	0	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0010	3138	2	2	0	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0011	3138	2	0	0	2	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0012	3138	1	0	0	0	0	1	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0013	3138	1	0	1	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0014	3138	1	0	0	1	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0015	3138	1	0	1	0	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0016	3138	1	0	0	1	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0017	3138	1	0	0	1	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPRIN2_chr12_30704553_30759951	0/0	c0018	3138	1	0	0	1	0	0	copy fasta	CAPRIN2	chr12	30704553	30759951
CAPS2_chr12_75270979_75335324	1/1	c0001	1674	280	66	52	115	9	36	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0002	1674	63	10	11	36	4	2	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0003	1674	6	3	1	2	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0004	1674	5	0	4	0	1	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0005	1674	2	0	0	0	0	2	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0006	1674	2	1	1	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0007	1674	2	0	0	0	0	2	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0008	1674	2	2	0	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0009	1674	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0010	1674	1	0	0	0	1	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0011	1674	1	0	0	0	0	1	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0012	1674	1	0	1	0	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0013	1674	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0014	1674	1	0	0	0	0	1	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0015	1674	1	0	0	0	1	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPS2_chr12_75270979_75335324	0/0	c0016	1674	1	0	0	1	0	0	copy fasta	CAPS2	chr12	75270979	75335324
CAPSL_chr5_35899288_35943622	0/0	c0001	627	222	25	33	125	9	30	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	1/1	c0002	627	159	55	35	44	9	14	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	c0003	627	7	6	1	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	c0004	627	6	0	0	6	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	c0005	627	4	4	0	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	c0006	627	2	0	0	2	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	c0007	627	1	0	1	0	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPSL_chr5_35899288_35943622	0/0	c0008	627	1	0	0	1	0	0	copy fasta	CAPSL	chr5	35899288	35943622
CAPS_chr19_5909254_5921211	1/1	c0001	570	351	67	61	167	11	43	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	c0002	570	21	11	3	3	0	4	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	c0003	570	11	5	4	0	1	1	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	c0004	570	7	6	1	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	c0005	570	3	3	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	c0006	570	2	2	0	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPS_chr19_5909254_5921211	0/0	c0007	570	1	0	1	0	0	0	copy fasta	CAPS	chr19	5909254	5921211
CAPZA1_chr1_112614832_112676616	1/1	c0001	861	319	68	56	159	15	19	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	c0002	861	37	8	14	13	1	1	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	c0003	861	6	6	0	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	c0004	861	2	0	2	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	c0005	861	2	0	0	2	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	c0006	861	1	1	0	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616
CAPZA1_chr1_112614832_112676616	0/0	c0007	861	1	1	0	0	0	0	copy fasta	CAPZA1	chr1	112614832	112676616