JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAPZA2_chr7_116857587_116927049	1/1	c0001	861	217	57	39	88	9	22	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA2_chr7_116857587_116927049	0/0	c0002	861	137	33	21	66	3	14	copy fasta	CAPZA2	chr7	116857587	116927049
CAPZA3_chr12_18733119_18744188	1/1	c0001	900	383	94	61	171	18	37	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0002	900	2	0	2	0	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0003	900	1	0	0	1	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0004	900	1	0	0	1	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0005	900	1	0	0	0	0	1	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0006	900	1	1	0	0	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0007	900	1	0	0	1	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0008	900	1	0	1	0	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZA3_chr12_18733119_18744188	0/0	c0009	900	1	1	0	0	0	0	copy fasta	CAPZA3	chr12	18733119	18744188
CAPZB_chr1_19333775_19490539	1/1	c0001	819	338	88	62	136	15	35	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	c0002	819	22	0	0	21	0	1	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	c0003	819	1	0	0	1	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	c0004	819	1	0	0	0	1	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	c0005	819	1	0	0	1	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CAPZB_chr1_19333775_19490539	0/0	c0006	819	1	0	0	1	0	0	copy fasta	CAPZB	chr1	19333775	19490539
CARD10_chr22_37485362_37524415	1/0	c0001	3099	71	14	12	28	6	10	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/1	c0002	3093	42	1	5	33	0	2	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0003	3093	22	14	2	5	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0004	3099	20	0	3	10	0	7	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0005	3099	18	8	2	6	0	2	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0006	3093	14	8	4	0	0	2	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0007	3093	9	8	1	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0008	3099	7	5	0	1	1	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0009	3099	6	0	0	5	1	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0010	3093	6	5	1	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0011	3099	5	1	1	1	0	2	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0012	3099	4	0	3	0	1	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0013	3099	4	3	1	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0014	3099	3	0	0	3	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0015	3105	3	1	1	0	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0016	3093	3	3	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0017	3093	3	0	3	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0018	3099	2	2	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0019	3099	2	2	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0020	3099	2	0	0	2	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0021	3099	2	2	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0022	3099	2	0	2	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0023	3099	2	2	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0024	3099	2	0	0	2	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0025	3099	2	0	1	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0026	3093	2	0	1	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0027	3093	1	1	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0028	3099	1	1	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0029	3099	1	0	0	0	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0030	3105	1	1	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0031	3105	1	0	0	0	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0032	3099	1	0	1	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0033	3099	1	0	0	0	0	1	copy fasta	CARD10	chr22	37485362	37524415