JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARD10_chr22_37485362_37524415	0/0	c0034	3099	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0035	3099	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0036	3099	1	0	0	0	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0037	3099	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0038	3099	1	0	0	0	0	1	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0039	3099	1	1	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0040	3099	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0041	3093	1	1	0	0	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0042	3093	1	0	0	0	1	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0043	3093	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD10_chr22_37485362_37524415	0/0	c0044	3087	1	0	0	1	0	0	copy fasta	CARD10	chr22	37485362	37524415
CARD11_chr7_2901142_3048867	0/0	c0001	3465	68	10	7	42	2	7	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0002	3465	47	8	10	12	7	10	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	1/0	c0003	3465	42	3	15	14	4	5	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0004	3465	24	2	7	13	0	2	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0005	3465	16	3	7	2	2	2	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0006	3465	9	8	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0007	3465	9	0	7	0	0	2	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0008	3465	8	7	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0009	3465	7	2	0	4	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0010	3465	6	6	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0011	3465	5	5	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0012	3465	5	1	0	1	1	2	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0013	3465	4	4	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0014	3465	3	2	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0015	3465	3	0	0	3	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0016	3465	3	1	0	1	1	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0017	3465	2	2	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0018	3465	2	2	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0019	3465	2	2	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0020	3465	2	2	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0021	3465	2	2	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0022	3465	2	0	0	2	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0023	3465	2	0	1	0	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0024	3465	2	0	1	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0025	3465	2	0	0	2	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/1	c0026	3465	2	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0027	3465	2	0	0	1	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0028	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0029	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0030	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0031	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0032	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0033	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0034	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0035	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0036	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0037	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0038	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0039	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867