JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARD11_chr7_2901142_3048867	0/0	c0040	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0041	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0042	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0043	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0044	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0045	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0046	3465	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0047	3465	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0048	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0049	3465	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0050	3465	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0051	3465	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0052	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0053	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0054	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0055	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0056	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0057	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0058	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0059	3465	1	0	0	1	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0060	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0061	3465	1	0	0	0	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0062	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0063	3465	1	0	0	0	1	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0064	3465	1	0	0	0	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0065	3465	1	0	0	0	0	1	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0066	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0067	3465	1	1	0	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD11_chr7_2901142_3048867	0/0	c0068	3465	1	0	1	0	0	0	copy fasta	CARD11	chr7	2901142	3048867
CARD14_chr17_80165030_80214331	1/0	c0001	3015	77	18	13	38	2	5	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0002	3015	32	2	4	21	1	4	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0003	3015	22	2	8	7	2	3	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/1	c0004	3015	21	3	3	12	2	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0005	3015	19	0	1	15	1	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0006	3015	18	5	4	6	1	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0007	3015	16	3	5	2	0	6	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0008	3015	15	2	6	5	1	1	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0009	3015	12	0	0	10	0	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0010	3015	11	4	0	3	2	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0011	3015	9	9	0	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0012	3015	9	1	0	4	1	3	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0013	3015	8	2	4	0	0	2	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0014	3015	8	1	6	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0015	3015	7	0	0	7	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0016	3015	6	5	1	0	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0017	3015	5	2	2	1	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0018	3015	5	0	1	0	4	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0019	3015	3	0	0	3	0	0	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0020	3015	3	0	0	0	0	3	copy fasta	CARD14	chr17	80165030	80214331
CARD14_chr17_80165030_80214331	0/0	c0021	3015	3	1	2	0	0	0	copy fasta	CARD14	chr17	80165030	80214331