JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARD16_chr11_105036563_105050335	0/0	c0003	294	1	0	0	0	1	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	c0004	294	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	c0005	294	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	c0006	294	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	c0007	294	1	0	0	1	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	c0008	294	1	1	0	0	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD16_chr11_105036563_105050335	0/0	c0009	294	1	0	0	1	0	0	copy fasta	CARD16	chr11	105036563	105050335
CARD18_chr11_105132714_105144769	1/1	c0001	273	421	94	82	191	14	38	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	c0002	273	5	0	0	1	0	4	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	c0003	273	2	2	0	0	0	0	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	c0004	273	2	0	0	2	0	0	copy fasta	CARD18	chr11	105132714	105144769
CARD18_chr11_105132714_105144769	0/0	c0005	273	2	0	0	0	0	2	copy fasta	CARD18	chr11	105132714	105144769
CARD19_chr9_93091217_93118283	1/1	c0001	552	307	75	55	145	6	24	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0002	552	19	7	4	0	4	4	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0003	552	18	1	5	0	2	10	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0004	552	5	5	0	0	0	0	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0005	552	4	0	4	0	0	0	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0006	552	1	1	0	0	0	0	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0007	552	1	0	0	0	0	1	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0008	552	1	0	0	0	0	1	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0009	552	1	1	0	0	0	0	copy fasta	CARD19	chr9	93091217	93118283
CARD19_chr9_93091217_93118283	0/0	c0010	535	1	0	0	1	0	0	copy fasta	CARD19	chr9	93091217	93118283
CARD6_chr5_40836367_40860354	1/1	c0001	3114	300	72	60	125	15	26	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0002	3114	76	2	7	54	1	12	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0003	3114	12	0	0	12	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0004	3114	7	1	2	0	1	3	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0005	3114	6	6	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0006	3112	5	0	5	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0007	3114	4	4	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0008	3114	3	2	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0009	3114	3	0	1	2	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0010	3114	3	0	2	0	0	1	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0011	3114	3	2	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0012	3114	2	2	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0013	3114	2	0	0	0	0	2	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0014	3114	2	2	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0015	3114	2	0	2	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0016	3114	2	2	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0017	3114	1	0	0	0	1	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0018	3114	1	1	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0019	3114	1	0	0	1	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0020	3114	1	1	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0021	3114	1	0	0	1	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0022	3114	1	0	1	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0023	3114	1	1	0	0	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD6_chr5_40836367_40860354	0/0	c0024	3114	1	0	0	1	0	0	copy fasta	CARD6	chr5	40836367	40860354
CARD8_chr19_48203086_48260912	0/1	c0001	1614	106	14	14	57	7	13	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	1/0	c0002	1614	77	25	5	43	0	3	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0003	1614	59	10	20	21	2	6	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0004	1614	35	3	14	8	2	8	copy fasta	CARD8	chr19	48203086	48260912