JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARD8_chr19_48203086_48260912	0/0	c0005	1614	19	16	3	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0006	1616	13	0	0	11	0	2	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0007	1614	9	8	1	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0008	1614	6	0	0	2	0	4	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0009	1616	5	0	2	1	0	2	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0010	1614	5	4	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0011	1614	4	2	2	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0012	1614	3	0	1	0	0	2	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0013	1614	3	1	2	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0014	1614	3	3	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0015	1614	2	2	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0016	1614	2	0	0	2	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0017	1614	2	0	1	0	1	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0018	1614	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0019	1616	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0020	1614	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0021	1614	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0022	1614	1	0	1	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0023	1614	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0024	1614	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0025	1614	1	1	0	0	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD8_chr19_48203086_48260912	0/0	c0026	1614	1	0	0	1	0	0	copy fasta	CARD8	chr19	48203086	48260912
CARD9_chr9_136358956_136378669	1/0	c0001	1611	236	62	38	94	10	31	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/1	c0002	1611	106	16	27	44	5	13	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0003	1611	32	7	0	20	1	4	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0004	1611	9	1	8	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0005	1611	6	4	2	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0006	1611	3	3	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0007	1611	3	0	0	3	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0008	1611	2	0	0	2	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0009	1611	2	0	2	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0010	1611	1	0	0	1	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0011	1611	1	0	0	1	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0012	1611	1	0	1	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0013	1611	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0014	1611	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0015	1611	1	1	0	0	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARD9_chr9_136358956_136378669	0/0	c0016	1611	1	0	0	1	0	0	copy fasta	CARD9	chr9	136358956	136378669
CARF_chr2_202907275_202993263	1/1	c0001	2178	277	55	51	133	6	30	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0002	2178	22	19	3	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0003	2178	9	0	5	0	4	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0004	2178	8	0	0	8	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0005	2178	5	5	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0006	2178	3	3	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0007	2178	2	0	0	2	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0008	2178	2	2	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0009	2178	2	0	0	2	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0010	2178	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0011	2178	1	0	0	1	0	0	copy fasta	CARF	chr2	202907275	202993263
CARF_chr2_202907275_202993263	0/0	c0012	2178	1	0	1	0	0	0	copy fasta	CARF	chr2	202907275	202993263