JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARF_chr2_202907275_202993263	0/0	c0013	2178	1	1	0	0	0	0	copy fasta	CARF	chr2	202907275	202993263
CARHSP1_chr16_8847947_8874006	0/1	c0001	444	265	35	44	142	11	32	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0002	444	171	45	38	67	7	14	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	1/0	c0003	444	18	16	1	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0004	444	3	3	0	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0005	444	3	0	1	0	0	2	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0006	444	3	1	2	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0007	444	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0008	444	1	0	0	0	0	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0009	444	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0010	444	1	0	0	1	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0011	444	1	0	1	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0012	444	1	0	1	0	0	0	copy fasta	CARHSP1	chr16	8847947	8874006
CARHSP1_chr16_8847947_8874006	0/0	c0013	444	1	0	0	0	0	1	copy fasta	CARHSP1	chr16	8847947	8874006
CARM1_chr19_10866553_10928075	1/1	c0001	1827	338	75	64	151	11	35	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0002	1827	4	0	0	0	0	4	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0003	1830	3	1	0	1	1	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0004	1827	2	2	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0005	1827	2	2	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0006	1827	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0007	1827	1	1	0	0	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0008	1827	1	0	0	1	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0009	1827	1	0	0	1	0	0	copy fasta	CARM1	chr19	10866553	10928075
CARM1_chr19_10866553_10928075	0/0	c0010	1827	1	0	0	0	0	1	copy fasta	CARM1	chr19	10866553	10928075
CARMIL1_chr6_25274374_25625530	0/0	c0001	4116	35	9	5	19	0	2	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0002	4116	23	16	3	3	1	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0003	4116	21	4	6	7	0	4	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0004	4116	18	5	4	3	0	6	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0005	4116	13	9	2	0	0	2	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/1	c0006	4116	12	1	3	5	1	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0007	4116	6	4	2	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0008	4116	5	0	0	3	0	2	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0009	4116	4	4	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0010	4116	4	0	1	2	0	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0011	4116	4	0	1	1	1	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0012	4116	4	0	1	0	0	3	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0013	4116	4	2	1	0	0	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	1/0	c0014	4116	3	0	2	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0015	4116	3	0	0	1	1	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0016	4116	3	3	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0017	4116	2	0	0	2	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0018	4116	2	0	1	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0019	4116	2	1	1	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0020	4116	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0021	4116	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0022	4116	1	0	0	0	0	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0023	4116	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0024	4116	1	0	0	0	1	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0025	4116	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0026	4116	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530