JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CARMIL1_chr6_25274374_25625530	0/0	c0027	4116	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0028	4116	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0029	4116	1	0	0	0	0	1	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0030	4116	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0031	4116	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0032	4116	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0033	4116	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0034	4116	1	0	0	0	1	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0035	4116	1	0	1	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0036	4116	1	1	0	0	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL1_chr6_25274374_25625530	0/0	c0037	4116	1	0	0	1	0	0	copy fasta	CARMIL1	chr6	25274374	25625530
CARMIL2_chr16_67640144_67662569	1/0	c0001	4308	243	73	48	82	12	27	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0002	4308	6	0	0	6	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0003	4305	6	4	0	0	0	2	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/1	c0004	4308	4	0	1	0	2	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0005	4308	3	0	0	0	0	3	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0006	4308	2	0	0	2	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0007	4308	2	0	0	2	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0008	4308	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0009	4308	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0010	4308	1	0	0	1	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0011	4308	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0012	4308	1	1	0	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0013	4308	1	0	0	0	0	1	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0014	4308	1	1	0	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0015	4308	1	0	0	0	0	1	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0016	4308	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0017	4305	1	1	0	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0018	4308	1	0	0	1	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0019	4308	1	0	1	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0020	4308	1	1	0	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0021	4308	1	0	0	1	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0022	4308	1	1	0	0	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL2_chr16_67640144_67662569	0/0	c0023	4308	1	0	0	1	0	0	copy fasta	CARMIL2	chr16	67640144	67662569
CARMIL3_chr14_24047009_24074729	0/0	c0001	4119	85	3	2	70	4	6	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0002	4119	82	1	6	67	1	7	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0003	4119	52	18	15	5	3	11	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0004	4119	48	10	22	3	3	10	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0005	4119	16	1	4	9	0	2	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0006	4119	11	0	6	5	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0007	4119	11	10	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0008	4119	8	8	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0009	4119	7	0	0	7	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0010	4119	7	7	0	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0011	4119	7	0	0	7	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/1	c0012	4119	5	0	1	0	0	3	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0013	4119	5	3	0	0	1	1	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0014	4119	4	0	3	0	1	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0015	4119	4	3	1	0	0	0	copy fasta	CARMIL3	chr14	24047009	24074729
CARMIL3_chr14_24047009_24074729	0/0	c0016	4119	3	1	1	1	0	0	copy fasta	CARMIL3	chr14	24047009	24074729